Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4087 ATGGCTAATACCCATAACATTCTTCTCATCTTCACCTTTATTATCTTCCTCACTACTTTCACATCTACAAATTCATGGGATGACCCTTTTTTCCTAAACCAATATTGCTCAAGTAACAGCACATTAGCCAATACTTCTTTCCAAATTAACCTCACCACTCTTCTCTCTTCCTTATCATCCATTGCCACAACCAAAACCAACACAAAATTCTACAACACAACATTCAATGGAAACAACCCTTCTGACACAATCTATGGCATGTACTTATGCAGAGATGATGTTCCTTCTCAACTCTGTCAACAATGTATAGTAAATGCAACACAAAGACTTACCTCAGAGTGTTCTTTGTCAAAAGAAGGTATTGTTTGGTATAATGAATGCATGGTTTGGTATTCCACAGCCTTTATCTTCTCAACTGTGGCAAGAACAGCACCTAGTTTTAACTTGTTCAACACCGACAAAGTCCCAAACACAAAAAGTTTCATGAGTTTATTGTTTTCTACAATGAACAAAACTGCAAATGAAGCGGCTTTTGGTAACAGTGTTAAAAAATTTGCAACAAATGAAATAACAATATCAAAATTTCAGACCCTTTATTGTTTAGTTCAATGCACACCAAATTTGTCACCACATGATTGTAGAATTTGTCTAAGTGGATTAATAGAGGATCTTCCAGGGTGTTGTGAAGATAGAGTTGGAGGAAGAGTTCTAAATCCAAGTTGTAATATTAGGTATGAATTTTACCCTTTTTATATCAAAAATATTGGTTCACCAAATCCTTCATCACAACAAATTCTACTTCCCCAAACAAAAAACTCAGATGCTGCTGATTCAATAGTTTCAGGAGACCCTTTTTACCTTTCACACAATTGTTCAAGTAACAAAACCTTCACGGTTAACAGCACTTTCAAAGTTCACTTGACAACCCTTTTTTCTTACTTGTCTTCTAATGCCACAAAAAGTCTATTTTATAAAGCTCATGTGGAAAATACAACTTTCGGACTCTTCATGTGCCGTGGCGATGTTCCATTTTCCTTATGTGAGATATGTGTGAAAAATGCAACTCAAAGAATGACCAAAGACTGTAACTTTTTTCAAGAGGGTGTCATTTGGTATAGTCAATGCATGATTCGGTATTCGAATTGGAATTTCTTCTCTTTAGTAGACAAAACTCATGTGTACTATGAGCTGAATGTTACTAGTGATTCTAGTCCCAACAAAGAGAGAAACTTGTTCAATTTTGTAATATCAACTACTTTATCAAATGTGGCAATTGTGGCAGGAGATAGTGATGCGAAGTTTGGAACAAAGTCATTGGAACTGAATGATTTACAAACACTTTATACACTTGGTCAATGTACACATGATTTGTCAAGTGATGATTGCAAGGGTTGTTTGGGAGATATTATTGGAAATGGAATTCCTTGGCCTTATTTGGGAAGTGTTGGTGGAAGAGTTTTATATCCTAGCTGCAATTTGAGGTTTGAATTGTTCCAATTTTATAGAGACAATGACAATGTTACCAAACCAAAACTTACTAATTCTTCATCAGAGAAAAGAACAAACCGGCCACGAACAATTACCTTGATTGTTTTGTTCTCAGTTCTTCCAGTGATACTCTTCTTTGTTGGCTTCTATTTGATAAAAAGAAAAGCAAAAAGGAGTTTTAGGTCTATTCTCAATGAAAACTTTGGTGATGAAAGTGCAACTTTAGAGCCATTACAATATGGCTTAGATGTAATTGAAGCAGCAACCAACAACTTTGCAAATGAAAATTTCATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGCACACTTTTGGATGGACGACAAATAGCCGTAAAAAGACTCTCAAAAAGCTCGACGCAAGGTGGAAAAGAGTTCAAGAATGAAGTATTGTTGATTGCCAAGCTTCAACATAGAAATTTAGTCACGTTCATCGGTTTTTGCCTCGAAGAACAAGAGAAAATACTTATTTACGAATACGTGCCGAACAAGGGCCTTGATCACTTCTTATTTGACGTTCAACAACCAAAGTTCTTAAGTTGGCCCGAACGTTACAATATTATAAGAGGAATAGCTCAAGGAATTATCTACTTACATGTACATTCTCGACTCAAAGTTATTCATCGTGACCTCAAACCTAGTAACATTTTACTAGACGAAAATATGATTCCAAAAATATCAGACTTTGGCCTTGCTAGAATTTTTGAACTAAACCAAGACGAAGCAAGTACAAATAGGATCGTCGGAACATTAGGTTATATGTCTCCGGAATATGCAATGCTGGGACAATTTTCTGAGAAATCTGATGTTTATAGTTTTGGAGTCATGGTTTTAGAAATTATGACAGGAAAGAAGAATGTAAGGTCTTATGAATCAATTGTTGGTGATAGTCTCCTGAGCTATGTTTGGAGACAATGGAGGGATGAAACACCATTCAACATATTAGACCCAAAAATGAAAGGAACTTATTCTGAAACTGAAGTGACAAAATGTATTCAGATTGGTTTATTATGTGCTCAGCAGTTCCCAGATGCAAGACCAACAATTGCGACAGTAGTTTCGTATCTTAACAACGACTTCATTGAATTACCAAATCCGCAAGAACCTACATTTTTGTTCCATGGTCAAATGGATGCAAAAGGCATTCCACAAGAATCAAGTTCTACTCAGTCTATTAGTACATCCACAGCTTTGACAGCCAATGAATTGTCAATAACCGAATTGCTTCCTCGATGA 2745 0.3592 MANTHNILLIFTFIIFLTTFTSTNSWDDPFFLNQYCSSNSTLANTSFQINLTTLLSSLSSIATTKTNTKFYNTTFNGNNPSDTIYGMYLCRDDVPSQLCQQCIVNATQRLTSECSLSKEGIVWYNECMVWYSTAFIFSTVARTAPSFNLFNTDKVPNTKSFMSLLFSTMNKTANEAAFGNSVKKFATNEITISKFQTLYCLVQCTPNLSPHDCRICLSGLIEDLPGCCEDRVGGRVLNPSCNIRYEFYPFYIKNIGSPNPSSQQILLPQTKNSDAADSIVSGDPFYLSHNCSSNKTFTVNSTFKVHLTTLFSYLSSNATKSLFYKAHVENTTFGLFMCRGDVPFSLCEICVKNATQRMTKDCNFFQEGVIWYSQCMIRYSNWNFFSLVDKTHVYYELNVTSDSSPNKERNLFNFVISTTLSNVAIVAGDSDAKFGTKSLELNDLQTLYTLGQCTHDLSSDDCKGCLGDIIGNGIPWPYLGSVGGRVLYPSCNLRFELFQFYRDNDNVTKPKLTNSSSEKRTNRPRTITLIVLFSVLPVILFFVGFYLIKRKAKRSFRSILNENFGDESATLEPLQYGLDVIEAATNNFANENFIGKGGFGEVYKGTLLDGRQIAVKRLSKSSTQGGKEFKNEVLLIAKLQHRNLVTFIGFCLEEQEKILIYEYVPNKGLDHFLFDVQQPKFLSWPERYNIIRGIAQGIIYLHVHSRLKVIHRDLKPSNILLDENMIPKISDFGLARIFELNQDEASTNRIVGTLGYMSPEYAMLGQFSEKSDVYSFGVMVLEIMTGKKNVRSYESIVGDSLLSYVWRQWRDETPFNILDPKMKGTYSETEVTKCIQIGLLCAQQFPDARPTIATVVSYLNNDFIELPNPQEPTFLFHGQMDAKGIPQESSSTQSISTSTALTANELSITELLPR* 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4087 914 Pfam Salt stress response/antifungal 291 381 IPR002902 -
Psa6g4087 914 Pfam Salt stress response/antifungal 407 496 IPR002902 -
Psa6g4087 914 Pfam Salt stress response/antifungal 157 247 IPR002902 -
Psa6g4087 914 Pfam Salt stress response/antifungal 36 133 IPR002902 -
Psa6g4087 914 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 277 506 - -
Psa6g4087 914 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 259 - -
Psa6g4087 914 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 516 904 - -
Psa6g4087 914 Pfam Protein kinase domain 590 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4087 914 Gene3D Phosphorylase Kinase; domain 1 551 663 - -
Psa6g4087 914 ProSiteProfiles Gnk2-homologous domain profile. 143 250 IPR002902 -
Psa6g4087 914 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672|GO:0006468
Psa6g4087 914 SMART serkin_6 588 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4087 914 CDD STKc_IRAK 594 861 - -
Psa6g4087 914 ProSitePatterns Protein kinases ATP-binding region signature. 594 616 IPR017441 GO:0005524
Psa6g4087 914 ProSiteProfiles Protein kinase domain profile. 588 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4087 914 SUPERFAMILY Protein kinase-like (PK-like) 572 885 IPR011009 -
Psa6g4087 914 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 277 506 - -
Psa6g4087 914 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 17 259 - -
Psa6g4087 914 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 516 904 - -
Psa6g4087 914 Gene3D - 284 384 IPR038408 -
Psa6g4087 914 Gene3D - 143 250 IPR038408 -
Psa6g4087 914 Gene3D - 392 500 IPR038408 -
Psa6g4087 914 Gene3D - 29 135 IPR038408 -
Psa6g4087 914 ProSiteProfiles Gnk2-homologous domain profile. 29 136 IPR002902 -
Psa6g4087 914 Gene3D Transferase(Phosphotransferase) domain 1 664 865 - -
Psa6g4087 914 ProSiteProfiles Gnk2-homologous domain profile. 394 500 IPR002902 -
Psa6g4087 914 ProSiteProfiles Gnk2-homologous domain profile. 285 384 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4087 Psa-Chr6 358312598 358316288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4087 280 914 Receptor kinase-like Gene Family AT4G05200 42.879 3.51e-174 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa6g4087 Pkinase 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4087 - - gmx:100806048 1204.89