Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4073 ATGGAGTTAGGTAGTTGCACAGATGAAACCACCACAAGCAATGACTCTCTTTCGGTATCTCTTGTTCCGGCGAAACTATCTCCACAGCCGCAGATGAACACACTCAGTCGCGTTGGAAGCGGTGCTAGCGCCGTTATCGATCCTGAAAACTGTGTCGGCTCCGGCGAAGCTGAATCTCGTAAACTCCCGTCGTCGAAATACAAAGGCGTGGTGCCACAGCCGAATGGACGTTGGGGAGCTCAGATTTACGAGAAACATCAGCGCGTATGGCTTGGTACGTTCAATGAAGAAGACGAAGCCGCCAGAGCCTACGATATCGCCGCCCTGAGATTCCGTGGCAAAGACGCTGTCACTAATTGTAAGAGCCTCGGCGGCGTCGAAAACGATACCGACGAAGCTGAAGCCGAGTTTCTCAACTCGCATTCCAAATCCGAGATCGTTGACATGCTTCGGAAACATACGTACGACGATGAGCTTAAGCAGAGCATGCGCGACTCGTGTGGCGGAAGGCAGCGGCGAAACGGAGAATCTGCTGGTTTAGCGTCACGTGGCGCGTGTGAAGCTAAGGCGCGTGAGCAGTTGTTTGAGAAAACCGTTACGCCAAGTGACGTTGGAAAATTGAATCGGTTGGTGATACCGAAACAGCACGCGGAAAAGCACTTTCCGTTAAATGCTGTTGCCGTGTCTGTCTCCGGCGATGGAACCTCGCCGTCAGTTGCGGCGGCGAAGGGTTTGCTATTGAATTTCGAAGACGTAGGAGGGAAAGTGTGGCGATTTCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACTAAAGGCTGGAGCCGGTTCGTTAAGGAGAAGAATCTCAAAGCCGGTGATGCGGTTCGGTTCTTCAGGTCGACCGGACCGGATAGACAGCTCTACATAGACTGCAAAGCCAGGAGCATTAGCGTTGTCGGCGTCAGTATTGGTGAAACCAATAATATCACCGGTGGTTTGTTTATTCCGGTCCAACCGGTAGTTGAACCGGTTCAAATGGTTCGGCTTTTTGGGGTAAATATTTTGAAAATACCTGGTTCTGATGGTGTTGGTGTTAGCTGTACTGGGAAAAGGAAAGAGATGGAGTTCTTTACCTTAGAATGCAGCAAAAAGCCAAAGATTATTGGAGCCTTATAA 1164 0.5017 MELGSCTDETTTSNDSLSVSLVPAKLSPQPQMNTLSRVGSGASAVIDPENCVGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAALRFRGKDAVTNCKSLGGVENDTDEAEAEFLNSHSKSEIVDMLRKHTYDDELKQSMRDSCGGRQRRNGESAGLASRGACEAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLNAVAVSVSGDGTSPSVAAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDAVRFFRSTGPDRQLYIDCKARSISVVGVSIGETNNITGGLFIPVQPVVEPVQMVRLFGVNILKIPGSDGVGVSCTGKRKEMEFFTLECSKKPKIIGAL* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4073 387 ProSiteProfiles AP2/ERF domain profile. 66 121 IPR001471 GO:0003700|GO:0006355
Psa6g4073 387 SMART B3_2 195 310 IPR003340 GO:0003677
Psa6g4073 387 Pfam AP2 domain 65 113 IPR001471 GO:0003700|GO:0006355
Psa6g4073 387 SUPERFAMILY DNA-binding domain 65 119 IPR016177 GO:0003677
Psa6g4073 387 CDD B3_DNA 194 296 IPR003340 GO:0003677
Psa6g4073 387 Gene3D AP2/ERF domain 65 122 IPR036955 GO:0003700|GO:0006355
Psa6g4073 387 SMART rav1_2 66 127 IPR001471 GO:0003700|GO:0006355
Psa6g4073 387 CDD AP2 65 119 IPR001471 GO:0003700|GO:0006355
Psa6g4073 387 SUPERFAMILY DNA-binding pseudobarrel domain 193 307 IPR015300 -
Psa6g4073 387 Gene3D - 184 317 IPR015300 -
Psa6g4073 387 MobiDBLite consensus disorder prediction 164 184 - -
Psa6g4073 387 Pfam B3 DNA binding domain 195 301 IPR003340 GO:0003677
Psa6g4073 387 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 387 IPR044800 GO:0003700
Psa6g4073 387 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 387 - -
Psa6g4073 387 ProSiteProfiles B3 DNA-binding domain profile. 195 311 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4073 Psa-Chr6 356818375 356820628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4073 5 387 B3 DNA Binding Superfamily AT1G25560 58.081 1.08e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Psa6g4073 B3 8.7e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4073 K09287 - gmx:100789009 533.102