Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4058 ATGTCATATACAAACATGGAAGTTCTTTCTCTCCCCCTCACATTCACCAAATCTCAAACCTTTCTATCTCTCAAACAACCAAATCACCATTTTCCAATAAACAATCTTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCCATTTCATGTAATTCCTCTTTTACCAGAATCGCAGCAACGAATGCCCAACCATCAATTTCACAAACTGATAAGTTGTTTCCTGCGGGAAATTCAAAGCATTGGATTGTCAGAATGGATAAGCCCGCTGTTGGTGTTGTTAGCAAAGCTCAGATTGTTGATCATTATGCTCAAATTTTGACTAAGGTTACGGGAAATGAAAAATATGCACAGATGTCTTTATATCATGTTTCTTGGAAAACCAACTTTGGCTTTTGTTGTGAAATTGATGAGGACCGTGCACATGAGTTAGCTGGTGTGCCTGGTGTTTTGTCGGTTCAGCCAGACCACAATTTTGACTCTGAAAATAAGAATTATGAAGGTAGAAACTTGGAAAATAGACTCAATGTGCCTAATTCTTTGGAAGGAACTCAAGAAACTTCAGTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGTGCTGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATCATAGATAAAATTTCAAAAAGATCCAAGGGTTATGCATTTATTGAATATACCACAGAAGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCTACCCCGCCAAGATACGACAAGGGTCGCACCAGACCATCTGCTTGA 852 0.3838 MSYTNMEVLSLPLTFTKSQTFLSLKQPNHHFPINNLSSSSFSSSSSSISCNSSFTRIAATNAQPSISQTDKLFPAGNSKHWIVRMDKPAVGVVSKAQIVDHYAQILTKVTGNEKYAQMSLYHVSWKTNFGFCCEIDEDRAHELAGVPGVLSVQPDHNFDSENKNYEGRNLENRLNVPNSLEGTQETSVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKPTPPRYDKGRTRPSA* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4058 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 259 IPR000504 GO:0003723
Psa6g4058 283 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 46 282 - -
Psa6g4058 283 Gene3D - 159 283 IPR012677 -
Psa6g4058 283 SMART rrm1_1 192 265 IPR000504 GO:0003723
Psa6g4058 283 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 46 282 IPR039206 GO:0016554
Psa6g4058 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Psa6g4058 283 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 64 158 IPR037045 -
Psa6g4058 283 SUPERFAMILY RNA-binding domain, RBD 183 280 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4058 Psa-Chr6 355167015 355170663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4058 185 276 C2H2 Transcription Factor Family AT2G19380 31.522 4.24e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4058 - - mtr:MTR_1g092860 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4058 6 355167015 355170663 Psa6g4058 6 355167015 355170663 ECH