Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4050 ATGAGATCCATTTTCATTTCATATACAACAGACATGTTTCTCTCACGTGTGAGGTCTATGCTCATGCAGCCATTCCGGTATCTGTCGGATCGTTTTTCATTTTTCAATTTGGGCCAGGGAGGTACAGCTTCTTCCGGTCCTTCCATTGATTCCAACAGCATCCATAGCTATAGATATGATGTGTTTATTAGTTTCAGTGGTGCTGACACCCGCAACACTTTTGTTGATCATCTTTATGCTCATCTAACTAGAAAGGGTATTTTCGCCTTCAAGGATGATATAAGGCTAGAGAAAGGAGAGTCCCTTTCGCCACAACTTGTACAAGCAATTGCAAATTCCCGAGTTTCTATTGTTGTCTTTTCTCAAAAATATGTACTGTCAACATGGTGTTTGGAAGAAATGGCTACTATTGCTGAATGTCGTAAAGACTTGAAACAAACTGTGTTCCCTGTTTTTTTTGATATCGATCCATCTCATGTACGAAAGCAGAGTGGGTTGTACCAGAATGCCTTTGTTTTACACACGAGGAAATTTAAAAATGATCCGAATAAGGTTGTGAGATGGAAGAGAGCCATGGTCGATTTAGCTGAAGTAGTTGGTTGGGATGGAACAAACAAGGTTAAAGCCATAATTCTAGATCCAAAGGGGCATAGTTCTGAATACCCTTTGTTGAGGGCCGAAGGATTGTCAATAATGAGAGGACTTAAAATTCTTATATTACATTTACATCATAAGATATTTTCAGGAAGTCTGGATTTTGTTTCCAACAGCTTGCAGTATCTTCTGTGGTATGGTTACCCTTTTGCTTCTTTGCCATTAAATTTTGAGCCGTTTCGACTTGTTGAATTGAATATGCCTTGTAGCCTTATCCAACGACTATGGGACGGTCACAAGGATCTCCCTTGTTTGAAAAGGGTGGATCTGAGCAACTCAAAATGTCTTGTGGAGACACCAAATTTTGCAGGAAGCCGGAGACTTGAGCGGCTAGATCTTACGGGATGCATAAGCCTATTTTATGTCCATCCATCCATTGGACTTTTGGATAAACTTGTTTTCTTGAGTCTGGAAGGCTGCAGCAGTTTGGTCAGGCTCGTTCTTGATGGTGACACTGCATTTAACTTATATTCTCTCAAAGTTTTGCACCTGTCTGGCTGCACAAAACTTGAAATGACACCCGTTTTTACCGAGGTGTCAAATCTTGAGTATCTTGATATTGATCAATGTACGAGTTTAGTGACGATTGATCAATCGATTGGGGACCTTACACGTCTTAAGTTCTTGAGTTTAAGAGACTGCACAAATCTTGTCAGCATGCCCAAAAGCATTAGTTCTATAATACCATCTCTTGGGACTTTAGACTTGTGTGGCTGCTTAAAATTAAAGAATCTACCCTTGGAGGGAAACATATCACTGCCTACAGAAATTATTGACCACTTTGATGATGTTATCATGTCTTTGATTTTTTTGGACCTAAGCTTTTGCACTCTTAGTACAGTCCCTGATGCTATTGCAGAGTTAAGGTATTTAGAAAGGCTAAACCTTGAAGGAAATAGCTTCGAATCACTACCATCTTCAATGGGGAGGCTTTCCAGACTAGCATATTTAAATTTGGCGCATTGCAGCAGGCTTCAATCTTTGCCTGAGCTCCAATTGTGTGCTACTTCTTCATCTGGAGGAAACTATTTTAAATTATTGTCTGGATCTCATAATCATAGGTCGGGATTATATATTTTCGATTCTCCCCTCTTGGAGATCCCAGAAGGAAGTCATAACTTGGCACTTTCGTGGCTGATGAAACTAGTTGAGAAACCTTGTCACTTCCGAAGTGGCCTAGATATTGTTGTTCCTGGATACCCATTTCCGTGGTGGTTTCATCATCAATTTAAGGGAAACTCAACAGTTAGGATAGCAGACTATGCGGGTGAGTTTGACAATTGGCTTGGCTTTGCCTTTGGCGTGACATTTGTGGAAAATCATCGCCCGGCAACATCTGGTTCTTCACATTATTCATTGTCGTCACATCTTCCCTATCCTCTTTATCTCTCTTTTGAAAGTGAACAAACGGAAGAAACCTTTGATATGCCGCTTCGGTTAGACCTGAACAAGGTTCATGGCTCATTTACAGGAGCGCATTTCTGGCTAATCTATATCTCTAGGCCCCACTGCCATTTTGTAACAACAGGAGCACGTATCACATTTAAAGCTCACCCAGATGTGGAGTTGAAAACATGGGGATTACGCATGGTATTCCAGCATGATATCTCTAGTTCATTCGAGTTGGAAAGTGAGATTCATCAACAAGATCTTCACTTGGATCAGGTATATGAAAGTAGCAGCAGCAGGAGTCCTGAAGTCCAGCTTCCTTATAATTGGTATGTTACCGACGAGGAAGAGGAAAAGTTTAAAATACAGCTTCGTTATAATTGGCATGTTACCGAGGAAGATGAAAATGAGAATAGAGAAGTAAATATGAAACAAAATCATCTCTCAAATATGGGACTTAACACGTAG 2511 0.4042 MRSIFISYTTDMFLSRVRSMLMQPFRYLSDRFSFFNLGQGGTASSGPSIDSNSIHSYRYDVFISFSGADTRNTFVDHLYAHLTRKGIFAFKDDIRLEKGESLSPQLVQAIANSRVSIVVFSQKYVLSTWCLEEMATIAECRKDLKQTVFPVFFDIDPSHVRKQSGLYQNAFVLHTRKFKNDPNKVVRWKRAMVDLAEVVGWDGTNKVKAIILDPKGHSSEYPLLRAEGLSIMRGLKILILHLHHKIFSGSLDFVSNSLQYLLWYGYPFASLPLNFEPFRLVELNMPCSLIQRLWDGHKDLPCLKRVDLSNSKCLVETPNFAGSRRLERLDLTGCISLFYVHPSIGLLDKLVFLSLEGCSSLVRLVLDGDTAFNLYSLKVLHLSGCTKLEMTPVFTEVSNLEYLDIDQCTSLVTIDQSIGDLTRLKFLSLRDCTNLVSMPKSISSIIPSLGTLDLCGCLKLKNLPLEGNISLPTEIIDHFDDVIMSLIFLDLSFCTLSTVPDAIAELRYLERLNLEGNSFESLPSSMGRLSRLAYLNLAHCSRLQSLPELQLCATSSSGGNYFKLLSGSHNHRSGLYIFDSPLLEIPEGSHNLALSWLMKLVEKPCHFRSGLDIVVPGYPFPWWFHHQFKGNSTVRIADYAGEFDNWLGFAFGVTFVENHRPATSGSSHYSLSSHLPYPLYLSFESEQTEETFDMPLRLDLNKVHGSFTGAHFWLIYISRPHCHFVTTGARITFKAHPDVELKTWGLRMVFQHDISSSFELESEIHQQDLHLDQVYESSSSRSPEVQLPYNWYVTDEEEEKFKIQLRYNWHVTEEDENENREVNMKQNHLSNMGLNT* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4050 836 Gene3D - 55 218 IPR035897 -
Psa6g4050 836 SUPERFAMILY L domain-like 229 556 - -
Psa6g4050 836 Gene3D Ribonuclease Inhibitor 370 471 IPR032675 -
Psa6g4050 836 Gene3D Ribonuclease Inhibitor 472 602 IPR032675 -
Psa6g4050 836 Pfam Leucine Rich Repeat 280 296 IPR011713 -
Psa6g4050 836 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 239 364 IPR044974 GO:0006952
Psa6g4050 836 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 499 652 IPR044974 GO:0006952
Psa6g4050 836 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 63 197 IPR044974 GO:0006952
Psa6g4050 836 SUPERFAMILY Toll/Interleukin receptor TIR domain 49 201 IPR035897 -
Psa6g4050 836 ProSiteProfiles TIR domain profile. 57 218 IPR000157 GO:0007165
Psa6g4050 836 SMART till_3 58 198 IPR000157 GO:0007165
Psa6g4050 836 Pfam TIR domain 59 194 IPR000157 GO:0007165
Psa6g4050 836 Gene3D Ribonuclease Inhibitor 222 369 IPR032675 -
Psa6g4050 836 PANTHER TMV RESISTANCE PROTEIN N 63 197 - -
Psa6g4050 836 PANTHER TMV RESISTANCE PROTEIN N 499 652 - -
Psa6g4050 836 PANTHER TMV RESISTANCE PROTEIN N 239 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4050 Psa-Chr6 354277556 354289555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4050 370 548 WRKY Transcription Factor Family AT4G12020 32.222 2.26e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4050 - - mtr:MTR_2g083520 851.662