Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4036 ATGATTTCGACTGGGATTAACTTGGTAATGACTGTGATTGGTTTTGCTGTTAGCACAATGTTCATTGTTTTTGTTTGCACTAGGCTCATTTGTGCTAGGATTCACTTGAATGCTTCTAGGAGATCCTTTCTCATTGCTTCTAGATCCAATCTCAGTTTGATGGAGAGGGGTTGTCAAGGTCTTGAAAGCATAGATGTAGCTAAATTTCCAGTTAAGAAGTACAGTGACAAGTTTTTTGCAGCTGGGGAAAATTCTCAATGCACAGTCTGTCTCTCAGAGTACCAAGGTGAAGATACACTGCGTATCCTTCCCCATTGTGGACACTCCTTCCATATGGCCTGCATAGACTTATGGCTGCAGCAGAACGCAACTTGTCCTGTTTGTCGAATATCACTGCGTGAATTTTCCGAGAGAACGCAATCATTGCAACCTGTATATAACTCTCATTATGGGATGGAGTCATTTGACACTCATCATCATCATTGTAGAATGGCTAATAATGGATTGTCGACAAGAACCCATGATAACCACGGAGTGAACCCTATTCAAGAGGATCACTTTCCATCTGAGGGTGATAGAGCAGTTGATGTAGAGAGTATCACCTCCTTAAGTCAGGGTGATTTCATTAAAGATGAAGAGAAGAAACATGTAGAGAGCCCATCAAATTTATAG 672 0.4122 MISTGINLVMTVIGFAVSTMFIVFVCTRLICARIHLNASRRSFLIASRSNLSLMERGCQGLESIDVAKFPVKKYSDKFFAAGENSQCTVCLSEYQGEDTLRILPHCGHSFHMACIDLWLQQNATCPVCRISLREFSERTQSLQPVYNSHYGMESFDTHHHHCRMANNGLSTRTHDNHGVNPIQEDHFPSEGDRAVDVESITSLSQGDFIKDEEKKHVESPSNL* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4036 223 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Psa6g4036 223 MobiDBLite consensus disorder prediction 207 223 - -
Psa6g4036 223 Pfam Ring finger domain 86 129 IPR001841 -
Psa6g4036 223 SMART ring_2 87 128 IPR001841 -
Psa6g4036 223 CDD RING-H2_PA-TM-RING 86 129 - -
Psa6g4036 223 PANTHER OS11G0150450 PROTEIN 1 222 - -
Psa6g4036 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 134 IPR013083 -
Psa6g4036 223 PANTHER OS11G0150450 PROTEIN 1 222 - -
Psa6g4036 223 SUPERFAMILY RING/U-box 81 135 - -
Psa6g4036 223 MobiDBLite consensus disorder prediction 203 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4036 Psa-Chr6 352757627 352760953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4036 13 132 C3H Transcription Factor Family AT4G10150 37.600 1.30e-21 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4036 - - aprc:113873018 378.637