Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4009 ATGGACTTGCCAAGACACCGTGCCACACCGACAACCTCTTTAAGGGACACATCAGACTCCTCCACTGGTAGCTGGGATGCCATCGAATGGACCAAAATTGAGCCAATTGCGCGCTTTGTCTCTCATGCCAATCTCGATTTCTTGCTCGATGACGAACGTGTTGTGGCAGAAGGACATGGTGTCGTTCTTGTCAATACAGATGATGCAGGCGTGTTGATTGTAACAAACTTTCGTGTAATATTTTTGAGTGAGGGAACTAGAAAAATTATTGCCCTTGGAACAATACCGCTAGCAACCATTGAGAAGTTTAACAAGACAGCAGTTAAGGTTCAGTCAAATACTCGTCAATTAGACAAGACACCAACACAGAGACTGCTGCAGGTGATTGGGAAAGATATGAGAATTATAGTCTTTGGTTTTAGGCCTCGTACGAAACAGAGACGTGCAATATATGATGCACTACTGAAGTGTACAAAGCCAACAATATTATGGGATCTTTATGCTTTTATGGCCGGGCCTTCCAGTTTTCAGAACACTTCTTCGTTGAACACTTCTTCGTTGGTGCGCTTATTAGATGAATATTTTCGACTTATTGGCAAAGTTTCACATCATGCTTCAATGGACATGATTGAAAGTGGGTCCTTCACCTTGTCAAATGACTTATGGAGAATAAGTGGTGTGAATTCCAGTTATACAATGTGCCAGAATTATCCATTTGCTTTGGTTGTTCCAAAGAGCATTAGTGATGATGAAGTGCTCCAGGCTTGCAAATTCCGTGCAAGATGCCGACTGCCTGTAATTTCTTGGTGTCATCCTGTTACTGGCGCAGCTCTTGCACGTTCTTCCCAGCCTTTAGTTGGTCTCATGAGGAATATGAGGAGCAACATGGATGAAAAACTTGTGGCTGCACTTTGCAGCAACCTTGATGGCTCAAGGAGAAAGCTATATATCGCTGATGCGAGACCAAGGAAAAATGCATTAGCTAATGGAGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCTGAGATTATCTTTTTTGGGATAGACAACATTCATGCAATGAGAGAGAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGGAGAACATCATCAGATGGAATGTCATCTTTTTTGAGACATGGTGGATCAATATGGGGTGGCGGCAATTTAAGCAGTATGTCTGCTTCAGTATCAACCCTTGGGGACAGTGGGTGGTTGTTGCACATTCAGAATGTCTTAGCTGGTGCAGCTTGGATTGCTGCTCGTATTGCTATGGAAAAGGCTTCTGTTCTTGTACATTGCAGTGACGGATGGGATAGGACAAGCCAGTTAGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCAGAGGGTTTCAGGCACTTGTTGAAAAAGACTGGCTAGCATTTGGTCATCCATTTTCTGATCGTGTGGGAACACCATCTATCTCTGAATTTGGCAACATGTCTTTTGAGTTATCTAGGCAACAGTCTTCAACTAGCATCCCATCATCACCCATGCACCAGTCATCAGGGACATTCGCGTCTCAACCTCCAGTTTCATCTCATGCACATAATTCAAACAACTACTCTCCCATTTTTTTGCAGTGGGCTGATTGTGTGTCACAAGTGATGCGGATGTATCCTTTTGCCTTTGAGTTTTCTGCGGCTTTCCTGGTAGACTTCTTAGACTGCATGTTCTCTTCTCGCTTTGGAAACTTCTTCTTTAATAGTGAGAAGGAGAGGCTGCAAGTCAATGTTTTTGAAAGTTGTGGATGTGTATGGGCATACCTGGCTGATATGCGGAGATCAGAAGGAAATTCCCATGTGCACTGTAATCCCTTTTATGATTCACTGAAGTACAACGGGCCTCTTCTCCCCCCAGCAGCAGCGTTAGCCCCAACTTTATGGCCTCAATTCCACCTTCGTTGGGCCTGCCCAGAAGAAGCACAGAGTGGAGAGATTGAAGCACAATGTAGGAAGATAAAACTGAAAAATTCTGAGATGGAGAAGGCTAAAGAAGTGGCAGACAGGAAACTTAGAGAAAATGCAAATGCTATAGAATCGTTGAATGCTGAATTGCGTCGTGAGAAACTGTTAAACATCTCAGCTATGACCAAGGCGAAAAGGATAATAAAAGAAAACACAGACATAAAGCGTGCAATTCAGTCAATTGGGTGCAAGATTCACATTTCTAATAGTGGTGATTGCATTCTTGATATTGAAAACAACCCAGAAAAGGCAGTTCAAAAATTGCATTTTTCCTCTAGGCAAGTATCAAGTAGCACTGTGAATAACGATAAAAAGGATATATCTCTTTCTGTAACAGAAGATGATGATGGAAACAATGTTATTAGTCGAATTTGTGAAACTCTATGCCCTTTTCGCAGTAGAGATGGAGGCTGCATGTGGCCAAATGGTGGTTGTGCTCAACTAGGTAGCCAGTTTGTTGGTTTGAAGGCAAATTTTGATGCATTTGACCGGCTTTCGATTGACGACAGTTATTTCAAACCCAAGTAA 2547 0.426 MDLPRHRATPTTSLRDTSDSSTGSWDAIEWTKIEPIARFVSHANLDFLLDDERVVAEGHGVVLVNTDDAGVLIVTNFRVIFLSEGTRKIIALGTIPLATIEKFNKTAVKVQSNTRQLDKTPTQRLLQVIGKDMRIIVFGFRPRTKQRRAIYDALLKCTKPTILWDLYAFMAGPSSFQNTSSLNTSSLVRLLDEYFRLIGKVSHHASMDMIESGSFTLSNDLWRISGVNSSYTMCQNYPFALVVPKSISDDEVLQACKFRARCRLPVISWCHPVTGAALARSSQPLVGLMRNMRSNMDEKLVAALCSNLDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIIFFGIDNIHAMRESFVRLREYMDTHGRTSSDGMSSFLRHGGSIWGGGNLSSMSASVSTLGDSGWLLHIQNVLAGAAWIAARIAMEKASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFRGFQALVEKDWLAFGHPFSDRVGTPSISEFGNMSFELSRQQSSTSIPSSPMHQSSGTFASQPPVSSHAHNSNNYSPIFLQWADCVSQVMRMYPFAFEFSAAFLVDFLDCMFSSRFGNFFFNSEKERLQVNVFESCGCVWAYLADMRRSEGNSHVHCNPFYDSLKYNGPLLPPAAALAPTLWPQFHLRWACPEEAQSGEIEAQCRKIKLKNSEMEKAKEVADRKLRENANAIESLNAELRREKLLNISAMTKAKRIIKENTDIKRAIQSIGCKIHISNSGDCILDIENNPEKAVQKLHFSSRQVSSSTVNNDKKDISLSVTEDDDGNNVISRICETLCPFRSRDGGCMWPNGGCAQLGSQFVGLKANFDAFDRLSIDDSYFKPK* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4009 848 Gene3D - 60 158 IPR011993 -
Psa6g4009 848 MobiDBLite consensus disorder prediction 1 20 - -
Psa6g4009 848 SUPERFAMILY PH domain-like 48 170 - -
Psa6g4009 848 ProSiteProfiles Myotubularin phosphatase domain. 199 650 IPR010569 -
Psa6g4009 848 CDD PTP-MTM-like 262 552 - -
Psa6g4009 848 Pfam Myotubularin-like phosphatase domain 166 591 IPR010569 -
Psa6g4009 848 ProSitePatterns Tyrosine specific protein phosphatases active site. 438 448 IPR016130 GO:0016311|GO:0016791
Psa6g4009 848 SMART gram2001c 37 107 IPR004182 -
Psa6g4009 848 Coils Coil 671 706 - -
Psa6g4009 848 PANTHER MYOTUBULARIN-RELATED 16 847 IPR030564 -
Psa6g4009 848 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 16 847 - -
Psa6g4009 848 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 215 654 IPR029021 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4009 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 66.317 0.0 1127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4009 K18081 - gmx:100781842 1323.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4009 6 348755156 348769998 Psa6g4009 6 348755156 348769998 ECH