Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3999 ATGGACAAAAAATTTATTACCAAAGAGAACAAAACTGCATATGTGAAGTTGGAACGCATAGTGCTAGATCAATTGGATCATCCTGGCATTGTGCGGCTATATTTCACATTTCAAGACTCATTTTCTCTGTACATGGCACTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATTACCAGGAAAGGCCGTCTAACTGAGGAGGAGGCACGATTCTATGCAGCTGAAGTTGTTGATGCTCTTGAATACATACATGGTTTGGGAGTGATACATCGTGATATTAAGCCAGAGAACTTATTACTCACAGCTGAAGGTCATATTAAAATAGCTGATTTTGGGAGTGTGAAGCCTATGCAAGATAGCCAAATTACCGTCCTTCCAAATGCAGCATCAGATGACAAAGCCTGCACATTTGTGGGAACGGCTGCTTATGTCCCTCCAGAGGTTCTTAATTCTTCTCCTGCAACTTTCGGAAATGACCTCTGGGCACTTGGCTGCACATTATATCAAATGCTTTCTGGAACTTCTCCTTTTAAAGATGCAAGTGAATGGCTTATTTTTCAAAGAATTATAGCAAGAGAAATTCGATTTCCAGATTACTTTTCAGACGAAGCAAGAGACCTTATTGACCGGCTATTGGATTTAGACCCGAGCAGGAGACCAGGCGCAGGACCTGATGGTTATGCTATTTTGAAAATACATCCCTTTTTCAAGACAGTTGCCTGGGATAACTTAAGGGCACAAACTCCTCCAAAACTTGCTCTGGAACCCGGGACTCAATCGCCTGCTGCCGATGATGTTCAGGAGTCATCATGGAGTCCTTCTCACATCGGCGATGGTTCTGCAGCTTCTGCTAGACAGCCTGATGGCACTGCATCGTCTTCAGAGGGAACCGGTTCTATAACCAGGCTAGCTTCAATTGATTCCTTTGATTCAAAATGGCAACAATTTTTGGATCCCGGGGAATCTGTCCTTATGATCTCCATGGTGAAGAAATTACAAAAAATTACAAGCAAGAAGGTTCAGCTCATCCTTACCAACAAGCCGAAGTTGATCTATGTGGACCCTTCAAAATTAATTGTAAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATTCAAGTGACTAGTCCTTCACATTTCAAGATTTGCACACCTAAAAAGGTTTTGTCGTTCGAGGACGCTAAGCAAAGAGCATCTATATGGAAAAAAGCAATTGAAGGACTTCAAAACCGGTGA 1248 0.4167 MDKKFITKENKTAYVKLERIVLDQLDHPGIVRLYFTFQDSFSLYMALESCEGGELFDQITRKGRLTEEEARFYAAEVVDALEYIHGLGVIHRDIKPENLLLTAEGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREIRFPDYFSDEARDLIDRLLDLDPSRRPGAGPDGYAILKIHPFFKTVAWDNLRAQTPPKLALEPGTQSPAADDVQESSWSPSHIGDGSAASARQPDGTASSSEGTGSITRLASIDSFDSKWQQFLDPGESVLMISMVKKLQKITSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVTSPSHFKICTPKKVLSFEDAKQRASIWKKAIEGLQNR* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3999 415 Gene3D Transferase(Phosphotransferase) domain 1 54 250 - -
Psa6g3999 415 Gene3D - 290 415 IPR011993 -
Psa6g3999 415 Pfam Protein kinase domain 9 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3999 415 SUPERFAMILY Protein kinase-like (PK-like) 3 295 IPR011009 -
Psa6g3999 415 ProSiteProfiles Protein kinase domain profile. 1 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3999 415 Pfam PH domain 312 414 IPR033931 -
Psa6g3999 415 MobiDBLite consensus disorder prediction 254 298 - -
Psa6g3999 415 SUPERFAMILY PH domain-like 231 414 - -
Psa6g3999 415 SMART serkin_6 2 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3999 415 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 1 411 - -
Psa6g3999 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 89 101 IPR008271 GO:0004672|GO:0006468
Psa6g3999 415 MobiDBLite consensus disorder prediction 263 298 - -
Psa6g3999 415 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 411 - -
Psa6g3999 415 Coils Coil 395 415 - -
Psa6g3999 415 Gene3D Phosphorylase Kinase; domain 1 1 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3999 Psa-Chr6 347612425 347619017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3999 1 415 AGC Kinase Gene Family AT3G10540 83.373 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Psa6g3999 Pkinase 1.2e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3999 K06276 - gmx:100788780 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3999 6 347612425 347619017 Psa6g3999 6 347612425 347619017 ECH