Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3987 ATGGAGAAAAGTCACGACAGTGAAGCTCTTCCAAACAGCAAGCCTTCCACCGAACAGGACATTATTGATGAGCTAAAATTGAGATCAAAGAAGTATCTCAGAGGAGAAGGTGGTAATTTGAAGGGTTTAAAGGATAAAAAGCTTAGGAGTCAGTTAGTTGCTAGAGAGAAATTATATGGAGAATCTGCGAAAGCTGCTGCCAAGGCTGAGAAATGGATTTTGCCTAGTGATCAAGGTTTTTTGGAGGCTGAAGGCATAGAAAAGACATATAGGATTAAGCAGGAGACAATAGCCCGTGAAGTCGATATTTTAAGCTCAAGGAACCAATATGATATTACTTTACCAGAGCTTGGTCCATATACTCTAGACTTTACTTCAAGTGGCCGGTATATGGCTGTTGGCGGTCGTAAGGGCCACCTAGCAATTGTGGACATGATGAATCTGAGCCTGATCAGAGAGCTTCAGGTAAGAGAAACTGTGCGTGATGTGGTATTCTTACATAATGAGCTCTACTTTGCTGCTGCCCAGAAAAAGTATTCATACATATATAATAATGATGGCACAGAGCTTCACTGCCTAAAGGAACATGGTTCAGTGTTGAGGCTGCAGTTTCTGAAACACCATCTTCTCCTGGCTTCTACCAACAAATTTGGGATGCTTCTTTATCAGGATGTTACACTGGGTGATTTAGCTGGGAAATATCGAACTGGTTTAGGACGTACAAGTGTGATGGAAGTAAACCCTTACAATTCGGTTGTTTCTTTAGGTCACTCAGCCGGTACAGTTACTATGTGGAAGCCAACTAGTTCTTCTCCCCTTGTCAAGATGCTATGTCATCACGGGCCAGTCTCAGCACTGGCATTTCACCCAAATGGCCACACAATGGCCACAGCTGGTAAAGATAAAAAAATTAAACTTTGGGACTTGAGGAAGTATGAGGCTTTTCAAACATTACCAGGCCATGCAAATAGTTTGGAGTTTAGTCAAAAAGGCTTGCTTGCTTGTGGTAATGGTTCATATATCCAGGTTCTTAGGGATGCTTCTGGTGCACAGAACTATTCAAGGTACATGACTCATTCAATGGTAAAGGGTTATCAGATAGGGAAGTTAGCTTTCCGACCATACGAAGATGTTCTAGGCATAGGGCATTCAATGGGTTGGTCTAGTATTCTTATTCCAGGAGCAGGAGAGCCCAACTTTGATTCATGGGTTGCGAATCCATTCGAAACACCTAAACAGAGAAGAGAAAAGGAAATAAAGTCTTGTATTGATAAGCTTCGATCCGAGACAATCATGCTAGATCCCAGCAAGATCGGTACTGTGAAATTTACTAAAAAAGAGAAGCCAACTGTGGAAGAGATGGATGCTGACATGGAAGCTGCTGTTGAAGCTGTCAAGGGCAAGAAACTGAAAAAGAAAACAAAAGGAAGAAGTAAGGCAGGTAAAATAATGCCAAAAAAGCAAGATGCAATTGCCACTGCAAAGAGGCCTTACTTAGAGCAGAAAATTCAAGAAGAGAAAAACATATCTAGTAAGAAACAGAAAACTAATGAGGGAGTTGAACTACCAAAGTCCTTACAGCGGTTTGCTCATAAGAAACCATCATCATAA 1611 0.414 MEKSHDSEALPNSKPSTEQDIIDELKLRSKKYLRGEGGNLKGLKDKKLRSQLVAREKLYGESAKAAAKAEKWILPSDQGFLEAEGIEKTYRIKQETIAREVDILSSRNQYDITLPELGPYTLDFTSSGRYMAVGGRKGHLAIVDMMNLSLIRELQVRETVRDVVFLHNELYFAAAQKKYSYIYNNDGTELHCLKEHGSVLRLQFLKHHLLLASTNKFGMLLYQDVTLGDLAGKYRTGLGRTSVMEVNPYNSVVSLGHSAGTVTMWKPTSSSPLVKMLCHHGPVSALAFHPNGHTMATAGKDKKIKLWDLRKYEAFQTLPGHANSLEFSQKGLLACGNGSYIQVLRDASGAQNYSRYMTHSMVKGYQIGKLAFRPYEDVLGIGHSMGWSSILIPGAGEPNFDSWVANPFETPKQRREKEIKSCIDKLRSETIMLDPSKIGTVKFTKKEKPTVEEMDADMEAAVEAVKGKKLKKKTKGRSKAGKIMPKKQDAIATAKRPYLEQKIQEEKNISSKKQKTNEGVELPKSLQRFAHKKPSS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3987 536 MobiDBLite consensus disorder prediction 469 536 - -
Psa6g3987 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Psa6g3987 536 SMART BING4CT_2 355 435 IPR012952 -
Psa6g3987 536 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Psa6g3987 536 PANTHER WD-REPEAT PROTEIN BING4 10 532 IPR040315 -
Psa6g3987 536 PANTHER BNAANNG36350D PROTEIN 10 532 - -
Psa6g3987 536 SUPERFAMILY WD40 repeat-like 111 384 IPR036322 GO:0005515
Psa6g3987 536 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Psa6g3987 536 Gene3D - 235 350 IPR015943 GO:0005515
Psa6g3987 536 MobiDBLite consensus disorder prediction 499 519 - -
Psa6g3987 536 Gene3D - 98 234 IPR015943 GO:0005515
Psa6g3987 536 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Psa6g3987 536 MobiDBLite consensus disorder prediction 1 21 - -
Psa6g3987 536 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Psa6g3987 536 SMART WD40_4 269 308 IPR001680 GO:0005515
Psa6g3987 536 SMART WD40_4 311 345 IPR001680 GO:0005515
Psa6g3987 536 SMART WD40_4 186 223 IPR001680 GO:0005515
Psa6g3987 536 SMART WD40_4 147 184 IPR001680 GO:0005515
Psa6g3987 536 SMART WD40_4 105 144 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3987 118 348 U-box Gene Family AT1G04510 27.016 8.22e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3987 K14768 - gmx:100802940 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3987 6 345817988 345824547 Psa6g3987 6 345817988 345824547 ECH