Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3972 ATGACAGATTTTCAGTCTCTACAGCAAAAGCCTGAATCTGCTGATTCCCATGCTGATTTTGAGCATGGATTGGAGAATTTTATGCGTGGTCAGTTGGATGATTGTATGTCATTTGCTTCATGTAGCTCTTCCCGGGCACCCGATGATGAGGACGATGAGAGTGATCAGCTAGTTCGGAGGAGAAGGAGGTCTGATCTTGAAGGGGACGATTTAGCAGAGTCGTCAGCAGCACGCAGGCGGCATTCACGAATTTTGAGCAGATGGGCTGCCCGGCAGGCGCAGGAGATGATAACTACTATTGAAAGAAGGAATCGAGAGTCAGAGTTGATGGCGCTTGCAGGGTTACATACGGTGTCCATGTTGGACTCCTCTTTTCTGAGGGGGTCGCAGTCTCCTAGTTCTGGACAGGAGGGGGCTGTGGAGAGGCCCAACACTCAGGCATCTTCCATTCTGCAGATGTGGCGGGAGTTAGAGGATGAACATTTGTTGAATCGGGCACGGGAAAGGATGAGGGAAAGGTTGAGGCAGCAAAGAAGTTCTGATGCTAATACCAATGTGTCAAGTACCATGTCTGACAGTCGAGGCAGTGAGAATCGAGGGAGTTTGGGGGATGCAAGTGAGAGTGAAAATGATTATGGTACCTGGTCACATGATCAGATTGGATCGCGGAATGCACATGTGAATCGTAACGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGTGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCATTCATCTAATGTGAGCCAGAGAAACAACAATCACAGATCAGAATGGCTTGGAGAAACAGAGCGTGAGAGAGTAAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAGCAGAGGGGTTCACGAGGGAGTCGTAGGGATGCTCAAGCAAGTGAATCTGCTCAAGCTGTTCGGACCCGTGATATGGCAGCTGAACATGATGAGGGTCAGCCAGAGCATGTTCGGCGGGACATGCTGAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTTAGGGTAGAAAGGGAAAGACAAAGAGAGCTGCAGGGTTTGTTGGAGCACCGTGCTGTTTCTGATTTTGCTCATCGCAATCGTATTCAGTCATTGCTCAGAGGCAGATTCCTTCGAAATGAAACTGTTGAAGATGAAAGGCCTCCTTCTACAGCTGCGAGTGAATTAGTTCAGTTACGACAACGACACACAGTCTCTGGTATAAGGGAGGGGTTTCGTTCAAGATTAGAAAATATTGTTCGCGGTCAAGGCGGCACCAATTCTGATGCCACGTCAAATAGTAACAATGATGAAACAAGACATGATGAGAACCAGTCAATCAGTATCGGAGATGCCCAACAAGAAAATCACGACCAAGAGCAGATTAGGGGCCCAGAAACTGACGCTCGTCAGATGCCTAATCAAACAGGAACTTTGGAGAGTAGCACAAGTGAGACTATTAGTTGGCAAGAAGCTAGTAATCAAGGAGGGGATTGGCAGGAACGAATTGCCGAAAATGGGGGAGAAGACTGGCAGCAGAGAATTAATGGTCCGTTTAATCAGCTCAGAGATGGAAGGGAAGCCAGTGATTGGCCACAGGAAACTCCCAGAAATTCAGCTGGAGAAGATCCACATCCACAGGAAGCTCAAAGAGTTTGGCAGGACCATAACACAAGGGAAGCTGATGGTAATTGGCCCGAAGAACCTTCTACAGCCTCAAGGAATCGCCGCGGTGTTCCTTTTAGAAGATTCAACAGATTTCATCCTCCTGATGATGATAACGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTATCTAACCTTCTTCGCAGTGGTTTCCGTGAAAGTCTGGATCAACTAATACAGTCATATGTTGAAAGGCAAGGCCGCGCTCCAGTTGACTGGGATTTGCATCGAAACTTGCCTACAACGACTCCTGCCTCACCTGAACGAGACCCTGATCAGCAGGGTGATGAACGTAATGAGGGTCAGCATGAAGTAATTAACAGACCTTCACTAGTGTTTCCTCCTCCACCCGTACCACCGCCACAACCTCTGTGGCACCAAGACTTGCACCAAACTGGATGGTCTCGTCATACCATGCATCGCTCAGAAATTGAATGGGAGATTATGAATGATTTAAGATCAGATATGGGAAGACTTCAGCAAGGCATGAATCATATGCAGAGGATGTTGGAAGCCTGCATGGATATGCAACTGGAATTGCAGAGATCTGTCAGACAGGAGGTCTCTGCAGCTCTGAATCGCTCAGCTAGTGAAAATGGATTGGGTGCTGAGACATCTGATGATGGATCTAAATGGGCGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAACCACATTGATTCGCTTTTGTACAGATGCGGACACATGTGCACATGTTCAAAATGTGCCAACGAGTTAATTCGTGGAGGAGGCAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2556 0.4754 MTDFQSLQQKPESADSHADFEHGLENFMRGQLDDCMSFASCSSSRAPDDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPSSGQEGAVERPNTQASSILQMWRELEDEHLLNRARERMRERLRQQRSSDANTNVSSTMSDSRGSENRGSLGDASESENDYGTWSHDQIGSRNAHVNRNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNHRSEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQASESAQAVRTRDMAAEHDEGQPEHVRRDMLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNETVEDERPPSTAASELVQLRQRHTVSGIREGFRSRLENIVRGQGGTNSDATSNSNNDETRHDENQSISIGDAQQENHDQEQIRGPETDARQMPNQTGTLESSTSETISWQEASNQGGDWQERIAENGGEDWQQRINGPFNQLRDGREASDWPQETPRNSAGEDPHPQEAQRVWQDHNTREADGNWPEEPSTASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPVDWDLHRNLPTTTPASPERDPDQQGDERNEGQHEVINRPSLVFPPPPVPPPQPLWHQDLHQTGWSRHTMHRSEIEWEIMNDLRSDMGRLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSASENGLGAETSDDGSKWAHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3972 851 MobiDBLite consensus disorder prediction 52 78 - -
Psa6g3972 851 MobiDBLite consensus disorder prediction 40 78 - -
Psa6g3972 851 MobiDBLite consensus disorder prediction 652 681 - -
Psa6g3972 851 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 851 - -
Psa6g3972 851 MobiDBLite consensus disorder prediction 431 509 - -
Psa6g3972 851 MobiDBLite consensus disorder prediction 297 318 - -
Psa6g3972 851 ProSiteProfiles Zinc finger RING-type profile. 799 838 IPR001841 -
Psa6g3972 851 MobiDBLite consensus disorder prediction 481 509 - -
Psa6g3972 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 777 849 IPR013083 -
Psa6g3972 851 SUPERFAMILY RING/U-box 791 844 - -
Psa6g3972 851 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 851 - -
Psa6g3972 851 MobiDBLite consensus disorder prediction 179 237 - -
Psa6g3972 851 Pfam Zinc finger, C3HC4 type (RING finger) 796 843 - -
Psa6g3972 851 MobiDBLite consensus disorder prediction 125 145 - -
Psa6g3972 851 CDD mRING-HC-C3HC5_NEU1 798 838 - -
Psa6g3972 851 MobiDBLite consensus disorder prediction 297 334 - -
Psa6g3972 851 MobiDBLite consensus disorder prediction 539 562 - -
Psa6g3972 851 MobiDBLite consensus disorder prediction 433 447 - -
Psa6g3972 851 MobiDBLite consensus disorder prediction 1 22 - -
Psa6g3972 851 MobiDBLite consensus disorder prediction 172 244 - -
Psa6g3972 851 MobiDBLite consensus disorder prediction 571 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3972 Psa-Chr6 345043801 345050707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3972 799 845 C3H Transcription Factor Family AT3G06140 42.553 1.79e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3972 - - gmx:100805607 1405.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3972 6 345043801 345050707 Psa6g3972 6 345043801 345050707 ECH