Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3961 ATGTCAGGAGAGGAAATTTGGCCATCTGTTGAAAAAGAATGTAAAAAATCACTGCCTCAATTTGATAACAGTAGTGGCTATAATTCAAAAACAGGAATATATCACTCTCTTGAAAAGCTTGGCACCAAGCATGAAATCCCAACAGAGCAAAACCTTAACATAGCAAGTCTTGTCCTGTCACAGTTCCCACGAGCAGAACTTGCTGACGCGAAAATTGCGTTTATTGATTTAAATACTAATCATAGTGTAACTTACGGTGAGCTTCGGCGATCGGTTTACTCGCTTGCAACAGCTTTGTTCCATGGACTTGAGGTAAGAAAAGGCGACGTCGTGTTTTTATTGTCTCCGAACTCGGTTTTGTACTCGACCATATGCTTAGCTGTGTTATCAATTGGTGCAATTCTTACCACTGCGAACCCTCTCAATACGAAGACGGAAATTGCGAAACAAGTACATGATTCGGGTGCTAAACTAGCCATCTCAACGCCAGAAGAGTTGCACAAACTGGTTCCAACAGGTGTTCCTACACTTCTCACCTCTAGTTCATCTGATGAAAAGTTTTTATCAGTTGAAGAGTTAATAGAAGGCTGCTATGATTCACGAGATTTGCCGCATGTTCATGTGGAACAATCGGACACTGCGGCTATACTTTACTCTTCAGGGACCACAGGAGTAAGTAAAGGTGTTGTTTTGACACATTCAAATCTCATAACCATAACAAAACTATTCTGCTGGTCTGCTGATGTATCAGCATCTCAAGACGATGTTTTCCTCGCCTTCATTCCAATGTTTCATATCTACGGACTGATGTTCTTTGGATTCGGGTTGTTGTGTGTTGGTGTCACAACAGTTTTGATGCAGAAATACAATTTTCAAGCTATGCTTATCGCTATCGAGAAGTACAAAGTTAATAACATACCAGCAGTGCCGCCGGTGATCCACGCGTTGGTGAAACATGCAAGCAAAGATGGGTGTGACTTGTCTAGCTTAAGAAGGGTTGGTTCAGGAGCAGCACCTTTGAGTAAGGAAATGTCACAGGAGTTCAGAAAGATGTTTCCTTGGATTGAACTACGGACGGGGTATGGACTAACAGAAAGTTGCGGGGGAGCAACCTTTTTTGCGTCGGATAAAGACGCTAAGGCTCATCCAGAAGCATGTGGAAAGTTGATTCCAACTTTTTGTGCAAAAGTGATGGACATTGAAACCTGGAAGCCTTTGCCTCCTAACAAGGAAGGAGAGTTATGGCTGAAAAGTGGCTCTATTATGAAAGAATATCTAGGAAATACGGAGGCAACAGCTGCAACAGTTGATTCAGAAGGTTGGTTGAGAACAGGCGATCTCGGTTATATTGATGAGAATGGAGTTGTCTGCATAGTTGAACGAATAAAGGAGCTAATCAAGCACAAAGGGTATCAGGTAGCTCCTGCGGAACTGGAATCTGTGCTACTAAGTCATCCTCTTATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTTGTGAGAAGAGCTGGTTCTCAACTTTCAGAAGACCAAGTCATTCAATTTGTTGCAGGCCAGGTGGCTCCCTATAAGAAAGTGAGAAGGGTGAGTTTTATTGACAATATTCCAAGGTCAGCTGCTGGCAAGATATTGCGCAAGGATCTTGTTTCCCAAAGCAAATATCAACCTGTCTCTAAGTTATGA 1713 0.4238 MSGEEIWPSVEKECKKSLPQFDNSSGYNSKTGIYHSLEKLGTKHEIPTEQNLNIASLVLSQFPRAELADAKIAFIDLNTNHSVTYGELRRSVYSLATALFHGLEVRKGDVVFLLSPNSVLYSTICLAVLSIGAILTTANPLNTKTEIAKQVHDSGAKLAISTPEELHKLVPTGVPTLLTSSSSDEKFLSVEELIEGCYDSRDLPHVHVEQSDTAAILYSSGTTGVSKGVVLTHSNLITITKLFCWSADVSASQDDVFLAFIPMFHIYGLMFFGFGLLCVGVTTVLMQKYNFQAMLIAIEKYKVNNIPAVPPVIHALVKHASKDGCDLSSLRRVGSGAAPLSKEMSQEFRKMFPWIELRTGYGLTESCGGATFFASDKDAKAHPEACGKLIPTFCAKVMDIETWKPLPPNKEGELWLKSGSIMKEYLGNTEATAATVDSEGWLRTGDLGYIDENGVVCIVERIKELIKHKGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVRRAGSQLSEDQVIQFVAGQVAPYKKVRRVSFIDNIPRSAAGKILRKDLVSQSKYQPVSKL* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3961 570 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
Psa6g3961 570 Gene3D - 41 463 IPR042099 -
Psa6g3961 570 SUPERFAMILY Acetyl-CoA synthetase-like 64 561 - -
Psa6g3961 570 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Psa6g3961 570 Pfam AMP-binding enzyme 70 467 IPR000873 -
Psa6g3961 570 CDD 4CL 46 558 - -
Psa6g3961 570 Gene3D - 464 565 IPR045851 -
Psa6g3961 570 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 19 569 - -
Psa6g3961 570 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 569 - -
Psa6g3961 570 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3961 Psa-Chr6 343857362 343859581 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3961 25 563 Monolignol Biosynthesis Gene Families AT4G05160 42.779 1.80e-149 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3961 K10526 - gmx:100783104 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1695 6 94527789 94530539 Psa6g3961 6 343857362 343859581 ECH
Psa6g3961 6 343857362 343859581 Psa6g3961 6 343857362 343859581 ECH