Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3960 ATGCTTAGCTGTGTTATCAATTGGGCAATTCTTACCCCTGCGAACCCTCTCAATACGAAGACGGAAATTGCGAAACAAGTACATGATTCGGGTGCTAAACTAGCCATCTCAACGCCAGAAGAGTTGCACAAACTGGTTCCAACAGGTGTTCCTACACTTCTCACCTCTAGTTCATCTGATGAAAAGGACACAGGAGTAAGTAAAGGTGTTGTTTTGACACATTCAAATCTCATAACCATAACAAAACTATTCTGCTGGTCTGCTGATGTATCAGCATCTCAAGACGATGTTTCCGCCTTCATTCCAATGTTTCATATCTACGGACTGATGTTCTTGGATTCGGTGCCGCCGGTGATCCACGCGTTGGTGAAACATGCAAGCAAAGATGGGTGTGACTTGTCTAGCTTAAGAAGGGTTGGTTCAGGAGCAGCACCTTTGAGTAAGGAAATGTCACAGGAGTTCAGAAAGATGTTTCCTTGGATTGAACTACGGACGGGTTATGGACTAACAGAAAGTGCGGGGGAGCAACCTTTTTTGCGTCGGATAAAAGACGCTAAGGCTCATCCAGAAGCATGTGAAAGTTGA 585 0.4479 MLSCVINWAILTPANPLNTKTEIAKQVHDSGAKLAISTPEELHKLVPTGVPTLLTSSSSDEKDTGVSKGVVLTHSNLITITKLFCWSADVSASQDDVSAFIPMFHIYGLMFLDSVPPVIHALVKHASKDGCDLSSLRRVGSGAAPLSKEMSQEFRKMFPWIELRTGYGLTESAGEQPFLRRIKDAKAHPEACES* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3960 194 SUPERFAMILY Acetyl-CoA synthetase-like 1 174 - -
Psa6g3960 194 Pfam AMP-binding enzyme 112 174 IPR000873 -
Psa6g3960 194 Gene3D - 1 112 IPR042099 -
Psa6g3960 194 Gene3D - 113 175 - -
Psa6g3960 194 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 58 - -
Psa6g3960 194 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 63 112 - -
Psa6g3960 194 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 114 191 - -
Psa6g3960 194 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 63 112 - -
Psa6g3960 194 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 114 191 - -
Psa6g3960 194 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 8 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3960 Psa-Chr6 343848737 343849521 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3960 2 174 Monolignol Biosynthesis Gene Families AT1G20510 30.159 4.84e-22 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3960 K10526 - gmx:100783104 233.032