Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3958 ATGGCTATCTACGACGGTCCCGGGTTCCGTTTCCACCCTACCGATGAAGAGATCATTTGCTTCTATCTGAAGCGGAAGCTCACCGGAAATTTACCACCTTCTTTCGACCATCTCGCTGTTATCGATATCTACAAGTTCGAGCCGTGGGACCTTCCCAGTTTGTCGAAGCTGAAGACCAGGGATTTGGAATGGTACTTCTTCACTGTGCTGGACAAGAAGTACGGTAATAGTTTGAGGTTGAATCGTGCTACTGATAGAGGGTATTGGAAGACTACTGGGAAGGATCGTATTATCAAGAACGAGAATGACATTGTTGGAATGAAGAAGACCCTTGTTTATCATTTCGGGAGGGCTCCACATGGTGACAGAACCAATTGGGTTATGCATGAATACAAGATGATTAACGAGGCTTTGGCTAGAGCTGGAATGCAGGACACTTATGTGCTCTGTAGGGTATTTGAGAAGAGTGGTTCGGGGCCTAAGAATGGGGAGAAGTATGGGGCTCCTTTTGTAGAGGCGGAATGGGAGCATGTCGGTAGACTGGTGGATCCTGTGCTGCCTGTTAACGAGCTTTTGACACACGAAGTGTCTGCTCCTGCTCCAGCATTTGTTCCTGCTTATGCTCCGGCACTTGCTCCTGCTACTGCTCCAGCACTTGCTTCTGCTCCTTATGTTGATGACCAGGTAGATCCCTTGCCAATTGTTGGTAATGAGCCTTTGAAACAAGAAGTATCTGCTTCTGCTCCTATTGATGATGATTTTGTTGAAGCCAAAGACCTTGACAAGGAGTTTGATGATACTAGTGATACAGTTGGAAGTGCTGATTTGGCATCGAACATCTGTTATGGGGAGTCTAGCAGTCATCCTCCTCAGCATTCCCAAGCATTTATTAGTGATCACAAGCAGCAGATGGGACCTGAGCTGTTTTATGGTAATCAGATTGATCAGCCTGATAGTATGGCTGATATATTTAATGTGAATATCAATTCTGTGCAAGATGGATTCAATGGGAATCCTCTGAATTTCAATTTTGAACTTGAGGATCCTGATGATCTATATTTTGATACCTGTGGTTATCTTATGAGTTCTGAAGAAGCATATTCAGAAACCAATGATTTTAAGAATCTTGACGATGCTATTCCCACTGAGACAGACCCTTCTGGTGCTGCAATGCTAGACGAGTACCTTGCATGCTCGGATGAAGATATATTCAAATATGTAAGCTTTGATTCTCCTTTGAATGTAGGGAGTGAAAGCCCCATTGCCAACCATGGACAACCTTTTGTTGAGCAGAATGTGGAGAGTGAAACCAATGGTAGTTCCTTGGCAAGCAGAGAAGTTCTTGAAGGACAGTCAAGTAATGGACCTTCTTTCCCAGAGGTGTCAAATTGGGTCTCAGGAGATGCAAATTATTTTGTGAAGCAAGCCAATAAATTGTTGGCCCACATGCCTGCTTCACCTGCATTTGCTTCAGAGTTTCCTACCAAGGAGTTTGCTCATGGGATATCTCTTGCAGCCGAGTCTTCCAATTCCGCTCACATAGCTGCAGGTATGATCAGCATAACAGATATTTCATTTAGAGGCAATGCGATGGATTGGATGGTGGGCAAGAATGGAGATTTTAACACCATAATGTCTACTGATGTTAACTCTGCTACTTTGCTTCCTCTTTCTGACCTGGTCTGTAGCAAAACTGCATTTATGTTATCTCATGGTTGGGTTTTCTTGGTGGGTTTCTCAGTTGTTGTTCTTTCACTGAGTTTCAAGATCGGAAGCTTCATGTATACGGGTAAATGA 1797 0.4391 MAIYDGPGFRFHPTDEEIICFYLKRKLTGNLPPSFDHLAVIDIYKFEPWDLPSLSKLKTRDLEWYFFTVLDKKYGNSLRLNRATDRGYWKTTGKDRIIKNENDIVGMKKTLVYHFGRAPHGDRTNWVMHEYKMINEALARAGMQDTYVLCRVFEKSGSGPKNGEKYGAPFVEAEWEHVGRLVDPVLPVNELLTHEVSAPAPAFVPAYAPALAPATAPALASAPYVDDQVDPLPIVGNEPLKQEVSASAPIDDDFVEAKDLDKEFDDTSDTVGSADLASNICYGESSSHPPQHSQAFISDHKQQMGPELFYGNQIDQPDSMADIFNVNINSVQDGFNGNPLNFNFELEDPDDLYFDTCGYLMSSEEAYSETNDFKNLDDAIPTETDPSGAAMLDEYLACSDEDIFKYVSFDSPLNVGSESPIANHGQPFVEQNVESETNGSSLASREVLEGQSSNGPSFPEVSNWVSGDANYFVKQANKLLAHMPASPAFASEFPTKEFAHGISLAAESSNSAHIAAGMISITDISFRGNAMDWMVGKNGDFNTIMSTDVNSATLLPLSDLVCSKTAFMLSHGWVFLVGFSVVVLSLSFKIGSFMYTGK* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3958 598 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 7 176 - -
Psa6g3958 598 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 246 593 - -
Psa6g3958 598 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Psa6g3958 598 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Psa6g3958 598 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
Psa6g3958 598 SUPERFAMILY NAC domain 6 155 IPR036093 GO:0003677|GO:0006355
Psa6g3958 598 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 246 593 - -
Psa6g3958 598 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 7 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3958 Psa-Chr6 343782862 343787622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3958 6 189 NAC Transcription Factor Family AT3G10480 49.772 1.22e-64 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa6g3958 NAM 4.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3958 - - mtr:MTR_1g090723 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3958 6 343782862 343787622 Psa6g3958 6 343782862 343787622 ECH