Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3955 ATGACGAGAAGAAAGGTGAAACTTGCATTTATCTCTGATGATACAGCAAGAAAGGCGAGCTATAATAAAAGAAAGAAAGGTCTCATTAAGAAGGTAAGAGAACTCACAACTCTTTGTGGTATTCCAGCTTGTGCTATAATTTCAAGTCCCTTTGATTCTCAACCAGAGGTGTGGCCAAATCCAGAAGGAGCCATGAGTGTGATTGATAGGTACAAGAATTCAACTGTGAAAGATGAAAACAGGAATGTGAACCAAGAGAGATTCCTCACGCAGAGGATTAATAAAGCTAGAAATCAGGTAAGAAAGTTGAAATACGATAACCGCGAACAAGAGCTGAATCTTCTCATGTTTGGTTACTTGCAAAACAACAATATTTCAGATGATTTAACTTCTGAAGAGTTGAAAGATTTTGATAAGCTGGTTGAGAAGAAGCTGAAGGAGGTTGATAGCAAGATTAAGAAACTTGATGCATGA 474 0.3755 MTRRKVKLAFISDDTARKASYNKRKKGLIKKVRELTTLCGIPACAIISSPFDSQPEVWPNPEGAMSVIDRYKNSTVKDENRNVNQERFLTQRINKARNQVRKLKYDNREQELNLLMFGYLQNNNISDDLTSEELKDFDKLVEKKLKEVDSKIKKLDA* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3955 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Psa6g3955 157 Coils Coil 93 113 - -
Psa6g3955 157 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
Psa6g3955 157 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Psa6g3955 157 PANTHER MADS BOX PROTEIN 2 154 - -
Psa6g3955 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa6g3955 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa6g3955 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa6g3955 157 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Psa6g3955 157 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Psa6g3955 157 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3955 Psa-Chr6 342972790 342973537 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3955 1 155 MADS-box Gene Family AT5G26630 44.231 1.27e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa6g3955 SRF-TF 3.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3955 - - gmx:100792290 188.348