Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3949 ATGGAACCAGCCTCTAATCATCATCAACATGATCATCATCAACATGATCATCAACAGCAGCAACAACAACAACTCTCTTTAGCCTCTAAGGAACTCAGCAATATCATCAAAGGGAAAAGAACCAAAAGGGTTAGGCCACAATCTCCTATGCCTTTTTCCATCACTGCTAATTCTTCAACCGGAGAAGGAGGAGGAACAGGTGAAGGTGAAGGTGAAAGAGAAGATTGTTACAATGGTGATGATGTCATCAACACCAACAATATCAATATCAATATCATCCACAATAACAACAATACCTCTCCGACAACATCTTATGTTGAAGAGAAACAGGAGAGTGTTATGGATGATGAAGAACATGATATGGCAAACTGCTTGATTCTATTGGCACAGGGACAATCAAAGGAATCGCCGAAAACTACGGATGAATTGGATGGTGGAATGATGAACTACACAAAATACAGCAGTAGAAAGTTCATGGAAGCTGCTACTTTGGATTCTGGAAGAGCAGGTTTCTATGTTTATGAATGCAAAACATGTAACAGGACTTTCCCTTCATTTCAAGCACTTGGTGGCCACAGAGCAAGTCACAAAAAGCCAAAAGCATTGGCAATTGCTCAAGAGCGAAAACAGTTTTTCGATGATGATCAAGAGTTTCAATTCAAGCCCAATCATAAACCAATTTCCCTTCAATTGAATAACAATGGTAAGGGAAATCTATACGGCGGAAACAATAACAACAACAAGTCTAAGGTTCACGAGTGTTCCATTTGTGGTTCTGAATTCACATCTGGACAAGCACTTGGTGGGCACATGAGGCGCCACCGCGCGCCGGTGGGGTCATCAACTGCTAACACCACACTCTCATTGACACCAATGGCTTTAGAGCCTGATGAAGATCATCAACCTAGAAAGAAAAGGAATGTTTTGTCTTTGGATTTGGATCTCAACCTTCCTGCACCTGAAGATGATCAGAAAGAATCAAAATTTGCCTTTGCTTCCAAGCAACAACACCAACAACAGCATGGACAAAAACAACATCAACAGCAACAACAGCAACAGCAGCAGCAACCGCAGCAACAAACAAATCTTGTCTTCTCTGCACCAGCTCTGGTAGATTGTCATTACTGA 1128 0.4158 MEPASNHHQHDHHQHDHQQQQQQQLSLASKELSNIIKGKRTKRVRPQSPMPFSITANSSTGEGGGTGEGEGEREDCYNGDDVINTNNININIIHNNNNTSPTTSYVEEKQESVMDDEEHDMANCLILLAQGQSKESPKTTDELDGGMMNYTKYSSRKFMEAATLDSGRAGFYVYECKTCNRTFPSFQALGGHRASHKKPKALAIAQERKQFFDDDQEFQFKPNHKPISLQLNNNGKGNLYGGNNNNNKSKVHECSICGSEFTSGQALGGHMRRHRAPVGSSTANTTLSLTPMALEPDEDHQPRKKRNVLSLDLDLNLPAPEDDQKESKFAFASKQQHQQQHGQKQHQQQQQQQQQQPQQQTNLVFSAPALVDCHY* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3949 375 MobiDBLite consensus disorder prediction 1 72 - -
Psa6g3949 375 MobiDBLite consensus disorder prediction 48 64 - -
Psa6g3949 375 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Psa6g3949 375 PANTHER ZINC FINGER PROTEIN ZAT5 29 375 - -
Psa6g3949 375 SUPERFAMILY beta-beta-alpha zinc fingers 173 274 IPR036236 -
Psa6g3949 375 MobiDBLite consensus disorder prediction 322 360 - -
Psa6g3949 375 MobiDBLite consensus disorder prediction 331 360 - -
Psa6g3949 375 ProSitePatterns Zinc finger C2H2 type domain signature. 254 274 IPR013087 -
Psa6g3949 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 274 IPR013087 -
Psa6g3949 375 MobiDBLite consensus disorder prediction 1 18 - -
Psa6g3949 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 201 IPR013087 -
Psa6g3949 375 Pfam C2H2-type zinc finger 173 199 - -
Psa6g3949 375 Pfam C2H2-type zinc finger 251 277 - -
Psa6g3949 375 MobiDBLite consensus disorder prediction 268 304 - -
Psa6g3949 375 Gene3D Classic Zinc Finger 172 274 - -
Psa6g3949 375 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 29 375 - -
Psa6g3949 375 SMART c2h2final6 174 196 IPR013087 -
Psa6g3949 375 SMART c2h2final6 252 274 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3949 Psa-Chr6 342782404 342784228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3949 28 375 C2H2 Transcription Factor Family AT5G04390 45.431 2.58e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g3949 zf-C2H2_6 9e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3949 - - lja:Lj5g3v1698900.1 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5822 5 504287011 504288357 Psa6g3949 6 342782404 342784228 ECH
Psa6g3949 6 342782404 342784228 Psa6g3949 6 342782404 342784228 ECH