Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3946 ATGTTTTCTAGGTTGTTACGTCCTCACGACCATGAAGGAAGTGTTGGTGTTGTTCATGAAGACACAAATCATCAACACAGCCACCTTGCAGACCCTTGTCTTGTTCTCACTTCTGATCCAAAACCTCGTCTTCGTTGGACTACTGACCTTCACCAACGCTTTGTTGATGCTGTTACCCAACTCGGTGGACCAAGCAAAGCCACACCGAAAGCAATCATGAGGACCATGAATGTCAAGGGTTTGACACTCTATCACTTAAAGAGTCATCTTCAGAAGTACAGGCTTGGTAAACAAGCTGGAAAAGATTCTGATGAGGGATGCAAAGATGGTTCATATCTTCTAGAAAGCCCTGGTACTGAAGACTCATCTCCTAAATTACTAGCTTCTGATGCAAACGAGGGTCATGAAGTCAAGGAGGCTTTAAGAGCCCAGATGGAAGTGCAAAGCAAGCTACATTTACTAGTGGAGGCAGAGAAGCACCTGCTAATTCGCCAAGATGCAGAACGGCGGTATATGGCCATGCTCGAGAGAGCTTGTAAGATGTTGGCTGATCAATTTATTGGCGAGTCAACTCTAGACACAGACATCCAAAAATATCAAGAACTACCAAGTAACGAACTAGGTGGAATGCATGTTTCAGACATACCGTACATTCTCCAGCCTCAAGGGGCCAACTGTTCGACTGAAAGTTGCCTAACATCCCTTGAGAGTCTAAGAGGGTTGACACTAGAAGGATCACCTGGCGGGACAAAGAGGATGGTGGGATTGGACTCGATGGTATCGCCTTTGATCTGGAGTGAAACTAACATGAGAAGTCAAGGCATTCATTTAGCCCAAGTGAATCCTCAAGGAATAGCAAGGTATGGAATGTAG 873 0.4525 MFSRLLRPHDHEGSVGVVHEDTNHQHSHLADPCLVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQAGKDSDEGCKDGSYLLESPGTEDSSPKLLASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLLIRQDAERRYMAMLERACKMLADQFIGESTLDTDIQKYQELPSNELGGMHVSDIPYILQPQGANCSTESCLTSLESLRGLTLEGSPGGTKRMVGLDSMVSPLIWSETNMRSQGIHLAQVNPQGIARYGM* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3946 290 Gene3D - 40 98 - -
Psa6g3946 290 SUPERFAMILY Homeodomain-like 41 96 IPR009057 -
Psa6g3946 290 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 290 - -
Psa6g3946 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
Psa6g3946 290 Pfam MYB-CC type transfactor, LHEQLE motif 136 181 IPR025756 -
Psa6g3946 290 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 290 IPR044848 GO:0003700
Psa6g3946 290 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
Psa6g3946 290 Pfam Myb-like DNA-binding domain 44 94 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3946 Psa-Chr6 342668192 342672639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3946 30 235 G2-like Transcription Factor Family AT3G24120 48.498 5.74e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa6g3946 Myb_DNA-binding 8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3946 - - gmx:100779871 435.261