Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3935 ATGAACAGCACTAACAATTCTGATTACAACCCTTCACAGAACTCAAATATGTTAACATATTATTATCTTGGAATGTCTTTTGCTTTTATTTTTCTAATGATGTTCATAGCTCTAGTTTCATGTTACTGTAACCACAGAAACTGGCAAAACTGGTTTCAATCTAGAGGCAGCAATTCCAACAGAACAGTGATCTCGATGGAGAGAGATCATACCGAGTTGAATATTGAAGTTTGTGCTGAAGAACAAGATGCAATCCTGAATAGTTACCCTATTTTGTTGTACTCACAAGTCAAGCTTCATAAGGCTGATTCAACATCACTCACTTGCTCAATATGTTTGGGAGATTACAAAGATTCAGAGTGGTTGCGACTCTTATCTGATTGTGGTCACTTTTTTCATAAGGAGTGTGTTGCTACATGGTTTAGGCTAAACCACTCATGTCCCATGTGTCGGAGCTCGGCACTTCCAACACCCATTGCTCAAGTTACACCCTTGTCAACTACTCATGATTGA 513 0.386 MNSTNNSDYNPSQNSNMLTYYYLGMSFAFIFLMMFIALVSCYCNHRNWQNWFQSRGSNSNRTVISMERDHTELNIEVCAEEQDAILNSYPILLYSQVKLHKADSTSLTCSICLGDYKDSEWLRLLSDCGHFFHKECVATWFRLNHSCPMCRSSALPTPIAQVTPLSTTHD* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3935 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 155 IPR013083 -
Psa6g3935 170 Pfam Ring finger domain 108 151 IPR001841 -
Psa6g3935 170 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Psa6g3935 170 SUPERFAMILY RING/U-box 86 156 - -
Psa6g3935 170 SMART ring_2 109 150 IPR001841 -
Psa6g3935 170 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 161 - -
Psa6g3935 170 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 161 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3935 Psa-Chr6 342112182 342112694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3935 21 168 C3H Transcription Factor Family AT2G35910 38.816 3.08e-26 97.8