Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3934 ATGAACAACAACAGCAACGATGGTTCTGACGCGAATGGGTTGACATATATCCTAACGTTTGTATTTGGTCTTGTATTCTTGATTCTTACAATAGTTGTTGCTTGTGTTCGAGTTCGAATGTCAGAAAATCGAAGCATGCTCAATATTTTGTCTGGTTTTCCACTGCATCATCAAGAAGACTCAACCATGGAACAAGGACTTGGTCGTCATAGGGACACAAATTTTGAAGGACACCCAAAGCTACTATACTCTCAAATTCAGAAGAATATAGGTGGCTCTTCAACTTCGAGTTGCTCTATTTGTTTAGGGGATTACAAAGAAAGTGACATGTTGAGGTTGCTTCCTAATTGTGGTCATCTTTATCATGCTGCTTGTGTTGATCCATGGCTTATGTTACATTCCAATTGTCCCATTTGTAGAAAATCTTTGCTACCTTCAACCTAG 444 0.3896 MNNNSNDGSDANGLTYILTFVFGLVFLILTIVVACVRVRMSENRSMLNILSGFPLHHQEDSTMEQGLGRHRDTNFEGHPKLLYSQIQKNIGGSSTSSCSICLGDYKESDMLRLLPNCGHLYHAACVDPWLMLHSNCPICRKSLLPST* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3934 147 SUPERFAMILY RING/U-box 97 145 - -
Psa6g3934 147 CDD RING-H2_PA-TM-RING 98 140 - -
Psa6g3934 147 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Psa6g3934 147 Pfam Ring finger domain 97 140 IPR001841 -
Psa6g3934 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 146 IPR013083 -
Psa6g3934 147 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 146 - -
Psa6g3934 147 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 146 IPR045899 -
Psa6g3934 147 SMART ring_2 98 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3934 Psa-Chr6 342047953 342049035 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3934 13 146 C3H Transcription Factor Family AT5G06490 36.943 8.80e-26 95.1