Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3931 ATGAACAATAACAGCACCTCACAACCCCTACACAACAGTTTTGATGCAAATAGATTCACATATATTCTAACATTTGTATTTAGTCTTGTATTCTTGATTCTTGCAATAGTTGTTGCTTGTGTTCGACATCGTATGTCACAAAATCGAAGCATGCTCAATATTTTGTCTGGTTTTCCACTACATCGTCAGGAAGAATCAACCACGGAACAAGGACTAGGTCGTCGTAGGGACAAAAATATTGAAGGACATACCAAGCTATTATACTCTCAAATTCAGAAGAATATAGGTGGCTCTTCAACTTCTTCATGTTGCTCTATATGTTTAGGGGATTACAAAGAAAGTGACATGTTGAGGTTGCTTCCAAATTGTGGTCATCTTTATCATGCTGCTTGTATTGATCCATGGCTTAGGCTACACTCCAATTGTCCCATTTGTAGAAAATCTTTGCTACCTTCAACCTAG 462 0.3766 MNNNSTSQPLHNSFDANRFTYILTFVFSLVFLILAIVVACVRHRMSQNRSMLNILSGFPLHRQEESTTEQGLGRRRDKNIEGHTKLLYSQIQKNIGGSSTSSCCSICLGDYKESDMLRLLPNCGHLYHAACIDPWLRLHSNCPICRKSLLPST* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3931 153 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Psa6g3931 153 Pfam Ring finger domain 104 146 IPR001841 -
Psa6g3931 153 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 152 - -
Psa6g3931 153 CDD RING-H2_PA-TM-RING 108 146 - -
Psa6g3931 153 SUPERFAMILY RING/U-box 103 151 - -
Psa6g3931 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 151 IPR013083 -
Psa6g3931 153 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 152 IPR045899 -
Psa6g3931 153 SMART ring_2 104 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3931 Psa-Chr6 341770819 341771881 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3931 58 152 C3H Transcription Factor Family AT5G06490 47.525 4.78e-27 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3931 - - gmx:102663718 175.252