Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3921 ATGGGTCACGAAACTCTCTTACTCACTGCCCCTCCTACTACCACACTAGTGAACCATCCACTCTCAGTCTCAGTGCCGTCTGCTTCAGCAACTGCTGCACCACCTACCTCCCTTGCTCCTGGATTTAGGTTTCACCCAACTGATGAGGAACTCGTTATTTATTACCTCAAGCGCAAGTTTTTTGGAAAACCCTTTCGATTTGATGCTATAGCAGAAGTTGATATCTACAAGAGTGAGCCCTGGGACCTATCAGATAAATCAAGATTGAAGACCAGAGACCAGGAATGGTATTTTTTTAGTGCATTGGACAAGAAGTATGGAAATGGTGGAAGAATGAACAGGGCTACCAATAGAGGTTACTGGAAAGCTACTGGAAATGATCGGCCGGTTAAACATGACCTAAGGACTGTAGGGTTGAAGAAAACTTTGGTGTTTCATAGTGGCCGAGCTCCTGATGGAAAGAGAACTAATTGGGTTATGCATGAGTACAGACTTGTTGAAGAAGAGATGGAGAGGGATGGGTCTGGACCCTCTCAGCCGCAGGATGCGTATGTCTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCAAATGGACAACGGTATGCACCTTTTGTTGAAGAAGAGTGGGAAGAAGGACTGGGAATGGTTCCTGGAGCCGAGCCTGTGGGTGATGGTCCTGTTTATCTCCCTCTGCGTATTGAAGGCAACAGCGGCGTTTCATGCAGCGAAGAAAGAAGCATTGTTGTGAAGGACACTTATTCCAACAATAAAACTCCACTAGACGTGAACAAGCTACCGATAGAAACTCAAAATCTTCTTGCTGTCTGTAAAAGGGAGAGCATGACTGAGTACCCATCCCCAGAAAAGAATGATTCTAAGCATAAACATGCGGATGACGAGTACCCACTCCAAATCATAAACCCAAAGCCCTTACCTCAAATATACAAAAGGCGTCGCCATAACTTGAACTCCAATCATTCCAATGTTTCCGGAGATTCATTCCCTAACAGTCAGGATCCATGCTCATCCACAATCACCACTGCCGCGACAACACTCCAGACAACCATGGCCCCCGCCACAACCTCCAATCCTCTACCGAAGAAACACTTTCTGTCAGCACTGGTTGAGTTTTCTCTCTTGGAATCACTCGAATCCAAGGAAAACCACACCTTCGTTCAGCCGGAGGATTTAGACTTGTCGAATCTCGAATCCTCCGTGCCTCCGAGTGTTGCAAAGTACATCAAACACCTGCAAAGTGAGACGCAGAAGCTTGGCGTTGAGAAGGAGACAATGCGGTTCGAGTTGACAAGTGCTCAGGCCATGATTAATATTCTTCAGTCCCGCGTCGAAACTCTCAGTAAAGAGAACGGCGAATTGAAGAAGATGATGATGAGAAATCCATAG 1410 0.4596 MGHETLLLTAPPTTTLVNHPLSVSVPSASATAAPPTSLAPGFRFHPTDEELVIYYLKRKFFGKPFRFDAIAEVDIYKSEPWDLSDKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNRGYWKATGNDRPVKHDLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEEMERDGSGPSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWEEGLGMVPGAEPVGDGPVYLPLRIEGNSGVSCSEERSIVVKDTYSNNKTPLDVNKLPIETQNLLAVCKRESMTEYPSPEKNDSKHKHADDEYPLQIINPKPLPQIYKRRRHNLNSNHSNVSGDSFPNSQDPCSSTITTAATTLQTTMAPATTSNPLPKKHFLSALVEFSLLESLESKENHTFVQPEDLDLSNLESSVPPSVAKYIKHLQSETQKLGVEKETMRFELTSAQAMINILQSRVETLSKENGELKKMMMRNP* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3921 469 SUPERFAMILY NAC domain 29 193 IPR036093 GO:0003677|GO:0006355
Psa6g3921 469 Pfam No apical meristem (NAM) protein 40 165 IPR003441 GO:0003677|GO:0006355
Psa6g3921 469 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 30 465 - -
Psa6g3921 469 Gene3D NAC domain 47 195 IPR036093 GO:0003677|GO:0006355
Psa6g3921 469 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 30 465 - -
Psa6g3921 469 Coils Coil 437 464 - -
Psa6g3921 469 ProSiteProfiles NAC domain profile. 38 192 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3921 Psa-Chr6 340933867 340938409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3921 1 463 NAC Transcription Factor Family AT3G10480 44.665 2.77e-121 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa6g3921 NAM 2.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3921 - - gmx:100808783 651.358