Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3911 ATGGAAGATACATTTCCCAAGATGGAAATCTTTACACAAAAGGAATTACCAACTTGTTTGCAAGAATCCAAGTATTTGGAAGATACAATTATAAGAAGAGGCTCTTACTCTCTCACTTCTTCACCATCACCACAAAACTTTTTCTGGTGTGCTTCAAATTCTACTTCAATGAAACAAGAGGTAGCACCTTTAAGTTTAACCACTTCTAATGTCTTTGCCTCAGATGTAAAACATGGTTTTCTTCCTCTAAATCTTTTGGAAACTCTCCCGACAAGGAGCGTAAATCCAGTGTTTGATGAGACAACAGAATCTATAGGTTCTTCGTCTGATACACCGAAGTATCCGAATTTGAGTTTGTTTTTGCAGGAACCATCCATGATATACTCATCAACATCACATATCAAAAGTAATGAAGTCATGTCAATAACTTCAAATCCAAGTTATCATGTGCCACAATTTGGCCTAACTCAGCATCAACAGAAGGTTGGTTATGACAAGACTTTCAATGAAAATTGGTTGAGTGCCACAAAGACTCAATCTATGAAATATAGTGGAAGAGGGAAGCTTTTCAAAGGGGTGAGGCAAAGACATTGGGGAAAATGGGTTGCTGAAATTAGGCTACCAAGAAACCGGACTAGGGTTTGGTTAGGAACATTTGACACAGCTGAAGATGCTGCAATTGCATATGATACAGCAGCATATATACTAAGAGGTGAATGTGCTCAGTTGAATTTTCCTGATTTAAAGCATGTGATTCGAGCGAATTCGTTGAATGGAACAACTGCTTCACTTGTTGAAGCAAAACTTCAAGCAATATCACAACAAGGTGTTTCTTCTTCTTCTTCTTCTTCTTCTAATTCTCATAGAAAGCAAGGTGATTCACTAGCTAGATCAAATAATAAGCATGTTGATGAGATTGAAAATGGAAATGAAACTATGAAGGAGTTGAAGGTTGGAGGTGACACAAATGAGAGAAGCAAAAGTATGCAGAATGAGATATGTGATGTGGAAACTGTTCAGTTAAGTAGAATGCCATCTTTAGATATGGATATCATTTGGAATGAACTTCTAGTTTCTGGTTCATGA 1086 0.3711 MEDTFPKMEIFTQKELPTCLQESKYLEDTIIRRGSYSLTSSPSPQNFFWCASNSTSMKQEVAPLSLTTSNVFASDVKHGFLPLNLLETLPTRSVNPVFDETTESIGSSSDTPKYPNLSLFLQEPSMIYSSTSHIKSNEVMSITSNPSYHVPQFGLTQHQQKVGYDKTFNENWLSATKTQSMKYSGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGECAQLNFPDLKHVIRANSLNGTTASLVEAKLQAISQQGVSSSSSSSSNSHRKQGDSLARSNNKHVDEIENGNETMKELKVGGDTNERSKSMQNEICDVETVQLSRMPSLDMDIIWNELLVSGS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3911 361 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 13 359 - -
Psa6g3911 361 SUPERFAMILY DNA-binding domain 189 247 IPR016177 GO:0003677
Psa6g3911 361 MobiDBLite consensus disorder prediction 294 314 - -
Psa6g3911 361 SMART rav1_2 189 252 IPR001471 GO:0003700|GO:0006355
Psa6g3911 361 PRINTS Ethylene responsive element binding protein signature 190 201 IPR001471 GO:0003700|GO:0006355
Psa6g3911 361 PRINTS Ethylene responsive element binding protein signature 212 228 IPR001471 GO:0003700|GO:0006355
Psa6g3911 361 Pfam AP2 domain 190 238 IPR001471 GO:0003700|GO:0006355
Psa6g3911 361 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 13 359 - -
Psa6g3911 361 ProSiteProfiles AP2/ERF domain profile. 189 246 IPR001471 GO:0003700|GO:0006355
Psa6g3911 361 MobiDBLite consensus disorder prediction 275 314 - -
Psa6g3911 361 MobiDBLite consensus disorder prediction 275 293 - -
Psa6g3911 361 CDD AP2 188 248 IPR001471 GO:0003700|GO:0006355
Psa6g3911 361 Gene3D AP2/ERF domain 189 247 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3911 Psa-Chr6 340349683 340351307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3911 1 356 AP2-EREBP Transcription Factor Family AT4G13620 38.642 1.29e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g3911 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3911 - - cam:101510582 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3911 6 340349683 340351307 Psa6g3911 6 340349683 340351307 ECH