Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3894 AATCTCTATAGAGGTACAGTGAGTGTTGGGTTTAGTGACAGAGTACCTTCTGATAAAGAGAATGGAGACAATATATGTCTACAGACTGGTGAAGAATTTTCTGCCGAGTTCTTACGCGACCGGATATTGCTTTTGCTAGAGGCTATGTTGCTGAAGTTGATTAACAATTATCAACTGGTCTACGAGGATCAAAAACACGTCCCTGGCCTACGGAAAATGGATTCTGATAGCAATTTGGATATTTTAGATATTGCTTTTGCTAGAGGCTATGTTGCTGAAGTTGACAACAGGGCATATCATAATAATTTGAGCAGATACCAGTGTGAACATGGTGGTATCAGACAAGCACCGAGTGCATTTTCTATACAATTATCAAGTAGGTTTTCTGACGGATGCGATCAAGTTGCCTCGGCATCAAATACTCCTCGTTCATGCCAACCTTATGGAACAGTATTCTCAGAAGGTTCCTTCTACAAAAAGATAAAGTTTTTATGTAGTTTTGGAGGTCGAATACTGCCAAGGCCAAATGATGGGAAGCTCAGATATGTGGGGGGAGAGACGCGGATTATATCGATCAGGAAAAACATCACACATGAGGAACTTACAAGGAAGACATCTGATATTTGCAATCAAACTCACATTATCAAATACCAGCTTCCTGGAGAGGATCTCGATGCTCTTATTTCTGTTTGTTCTGATGAGGATCTTCATCATATGATTGAGGAGTATGAGGAGCTTGAAAGAGGTGGAGGCTCGCAACGACTGAGGATTTTTCTCATAGCTTCAAATGAATCAGAGAGTCCAAATTCTAATGAACAAAGAGGCAATCAGCAAAGTGATGCTGATTATCATTATGTTGTTGCTGTTAATGGTATACTAGATCCAAGTCCGCGAAAGAATCTTAGTGGACTGAATCTGGCAAGCCATGCAAGTCAGTTTACAACTGCCTCTGATTACAACAGTCCACATTTCCATAGGGAATCATCCACATATGCATTTGCTTCAGATTTTATGGATTGCAGCCCAACCTCTTCAAATTTGGCAGGGACAATGTCAAAACAAAGTCCATATGTAACATCAATGAAGGTAGCGGGCAAGTCGTTTGATCAAATGCCTCCATCTCCCATTTGTCCACAGCCTAAAGATCCAAATATTTCTAATGTCCAGTTATTTACGGATCAACCATATAATGTTGTTAATGAAAACATTATTCCCTATGTCATGGAAAAAATTCCACGCGACAACTCTATGTATGTAGACAGTACCGGATATGTTGATCCCATTGCATATTATAACAATCTTCCCCAAGGGCCTCCATGTGTGAACCACCATCCTAGTAATCAATATCCATTGGAATCTGACCAAATCAGGAAGTCTAACGCTAATTTCCATTTTCACAGAAGAAACAATAGTAAAGAATTTGTTTCTTCTGCAATTTTTAATCAGACAGATACGAAATTTGAGAGGCCTTTAGTAAACAAAGAAGGTTCATACCATTTTAACAAGCTTGTCTCTCATCCACATCAGTCATCGAGTATTTTCTCAGTGTCTGATGATAAGGATGTTTCTCAGTACAGAATGTTGCATGCACTCTCTGACTCAACGCTTCTGGAGAATAGTGAGAACTACAAAGGTCACCTGCAATTTCCGCTTAATGTTGAGAGAGACAAATTGTCGTCGCTGGGAACTTCAAGCTCTTTGGAAGAATGTTCAATGCAGCCAGAAGAGATAAGTGATGAGAAAGAACGTACAGTTTTACATCAAAACTGGCCGACTTTTGGAATGACTGATAGTTGCAAGCGACTGTCAGAAATTGGTAAAGAGAACCTACAATGTGCAGGTAAAAGCACTGGTTGGTTTGTTGAAAAAGTTGGAGCTGTGCCACAACAGTTACAGTACATCTACTATCAACATGGTGCTTGCTCGTCTTCACCAGATTTACAAAGCAGTGAATGCAGTGATTCTGCTGCACCACTTATGTCATCACAGTTGGCTAGATGCATGACAGAGCAACCAAATGATATACCGTTTGACACAATTGCTTCTGAGTTTCCTATGAGAAGCCAAAGTTCACCAATGCATCACCAATATGCTGTGTCAGAGACAAAAGACAGTCAACAACTTCCCCCTGGCTTCTTTGAGATACGTCCTATTGACCCCCAAACTGACACAGAATCTGTGCTACCTATCTCGTATCCAGATGTGGTTTCTTCTTCACTAAGAGAGGTTCTTGACCCTGACGACGATCCTGCATACTACCAGAACCAAAAGGAAGAAAGCATAGTCACTAAGAAACAATCGTATGAATACATTGATGAATTTTCCATCAACAAGGCAGAATCAGCAGCAGTTGTCAAAGAATCAATTGATTATATTTCTTCAAGTATTCAGTCATGCTTACAAGTTGTCTCAAATACAGATGAAGAGGGCAAACATACATATTCTGAAAAAGCAGGGGTAGTGTGTGTTAATCCAGAATCTGAAAGTAAGCTTGCAAAAGCTGATAATGAAAACTTCAATAAGCCTATTGGTGATCCAGAAACTGCTGAAACAGAGTCGGAACTTTATGGTTTACAGATTATTGAGAATGGTGATCTTGAAGAACTACATGAGCTAGGATCTGGAACCTTTGGAACCGTTTATCATGGCAAATGGAGAGGAACAGATGTTGCAATTAAGAGAATAAAAAGTAGCTGTTTCGCTGGTAGAATGTCAGAGCAAGAGCGGTTGACTAAAGATTTTTGGAGAGAAGCAAAGATTCTATCAACTCTTCACCATCCAAATGTGGTGGCATTTTATGGGGTAGTTCCAGATGGCCCAGGTGGAACATTGTCAACTGTAACAGAATACATGTTGCACGGATCACTGAGAAATGTTCTCTTGAAGAAGGAGAGAGTGCTTGACCGTCGTAAAAGGATCATGATTGCAATGGATGCAGCCTTTGGCATGGAATATTTGCATTTAAAAAGTATTGTTCATTTTGATTTGAAGTGTGATAATTTGCTTGTCAACTTGGGTGATCCTGAGCGGCCTGTATGTAAGGTTGGAGATTTTGGGCTATCGAGAATTAAACGCAACACACTTGTTTCTGGTGGTGTCAGAGGGACTCTTCCATGGATGGCACCGGAACTACTGGATGGTAACAGCATTAGAGTATCTGAGAAGGTCGATATTTTCTCATTTGGTATCACAATGTGGGAAATCTTGACTGGGGAAGAACCTTATGCTAACATGCACTGTGGTGCTATCATAGGAGGTATTGTCAATAATACGCTAAGGCCATCTATTCCAAAACGCTGTGATTCTGAGTGGAAAAAGTTGATGGAAGAATGTTGGAGCCCTGAACCTGAGGCCAGGCCAACCTTCACAGAAGTTAAAAATAGACTCCGCAACATGTCAGCTGCACTGCAGAAAAGGAGACCTAATGTTGGGATTCGGTGA 3441 0.4057 NLYRGTVSVGFSDRVPSDKENGDNICLQTGEEFSAEFLRDRILLLLEAMLLKLINNYQLVYEDQKHVPGLRKMDSDSNLDILDIAFARGYVAEVDNRAYHNNLSRYQCEHGGIRQAPSAFSIQLSSRFSDGCDQVASASNTPRSCQPYGTVFSEGSFYKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKNITHEELTRKTSDICNQTHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERGGGSQRLRIFLIASNESESPNSNEQRGNQQSDADYHYVVAVNGILDPSPRKNLSGLNLASHASQFTTASDYNSPHFHRESSTYAFASDFMDCSPTSSNLAGTMSKQSPYVTSMKVAGKSFDQMPPSPICPQPKDPNISNVQLFTDQPYNVVNENIIPYVMEKIPRDNSMYVDSTGYVDPIAYYNNLPQGPPCVNHHPSNQYPLESDQIRKSNANFHFHRRNNSKEFVSSAIFNQTDTKFERPLVNKEGSYHFNKLVSHPHQSSSIFSVSDDKDVSQYRMLHALSDSTLLENSENYKGHLQFPLNVERDKLSSLGTSSSLEECSMQPEEISDEKERTVLHQNWPTFGMTDSCKRLSEIGKENLQCAGKSTGWFVEKVGAVPQQLQYIYYQHGACSSSPDLQSSECSDSAAPLMSSQLARCMTEQPNDIPFDTIASEFPMRSQSSPMHHQYAVSETKDSQQLPPGFFEIRPIDPQTDTESVLPISYPDVVSSSLREVLDPDDDPAYYQNQKEESIVTKKQSYEYIDEFSINKAESAAVVKESIDYISSSIQSCLQVVSNTDEEGKHTYSEKAGVVCVNPESESKLAKADNENFNKPIGDPETAETESELYGLQIIENGDLEELHELGSGTFGTVYHGKWRGTDVAIKRIKSSCFAGRMSEQERLTKDFWREAKILSTLHHPNVVAFYGVVPDGPGGTLSTVTEYMLHGSLRNVLLKKERVLDRRKRIMIAMDAAFGMEYLHLKSIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSIRVSEKVDIFSFGITMWEILTGEEPYANMHCGAIIGGIVNNTLRPSIPKRCDSEWKKLMEECWSPEPEARPTFTEVKNRLRNMSAALQKRRPNVGIR* 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3894 1146 SMART PB1_new 175 262 IPR000270 GO:0005515
Psa6g3894 1146 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 63 1142 - -
Psa6g3894 1146 Gene3D Phosphorylase Kinase; domain 1 859 953 - -
Psa6g3894 1146 ProSitePatterns Serine/Threonine protein kinases active-site signature. 991 1003 IPR008271 GO:0004672|GO:0006468
Psa6g3894 1146 CDD STKc_MAP3K-like 872 1129 - -
Psa6g3894 1146 CDD PB1_UP2 164 260 - -
Psa6g3894 1146 ProSitePatterns Protein kinases ATP-binding region signature. 872 893 IPR017441 GO:0005524
Psa6g3894 1146 SMART serkin_6 866 1135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3894 1146 PANTHER SERINE-THREONINE PROTEIN KINASE 63 1142 - -
Psa6g3894 1146 Pfam PB1 domain 176 259 IPR000270 GO:0005515
Psa6g3894 1146 ProSiteProfiles Protein kinase domain profile. 866 1136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3894 1146 Pfam Protein tyrosine and serine/threonine kinase 868 1129 IPR001245 GO:0004672|GO:0006468
Psa6g3894 1146 Gene3D - 179 262 - -
Psa6g3894 1146 SUPERFAMILY CAD & PB1 domains 176 270 - -
Psa6g3894 1146 PRINTS Tyrosine kinase catalytic domain signature 948 961 IPR001245 GO:0004672|GO:0006468
Psa6g3894 1146 PRINTS Tyrosine kinase catalytic domain signature 985 1003 IPR001245 GO:0004672|GO:0006468
Psa6g3894 1146 PRINTS Tyrosine kinase catalytic domain signature 1056 1078 IPR001245 GO:0004672|GO:0006468
Psa6g3894 1146 PRINTS Tyrosine kinase catalytic domain signature 1100 1122 IPR001245 GO:0004672|GO:0006468
Psa6g3894 1146 SUPERFAMILY Protein kinase-like (PK-like) 855 1129 IPR011009 -
Psa6g3894 1146 Gene3D Transferase(Phosphotransferase) domain 1 954 1143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3894 Psa-Chr6 339477986 339483898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3894 16 308 MAP Kinase Kinase Kinase AT1G16270 38.835 1.31e-43 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Psa6g3894 PK_Tyr_Ser-Thr 1.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3894 - - gmx:100810711 1561.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3894 6 339477986 339483898 Psa6g3894 6 339477986 339483898 ECH