Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3882 ATGAACATCTTCATCTTCCTCTTCGCCACCTTATTAACAACTCTCCCTCACCCTTCTCTCTCTGCCACGTGTCCTCTCAACTTCACACTCCTAACAATCCTCACCGGCGCCGCCTCAACACCACCGTCTTCCTTCACTTCAACTCCATGTCAATTCGTTCACCAGGCCCTCCGCCTCGTCCAATCCGACTACCTCCGCCGCACCGACTTCTTCCTCCCTCCGTTAAACTCCTCCATCCCATGCTGGAACTCTTTCCAATCCTACATCAACCAGTTCGCTCCGAAATTCGACATTCGTTCCTCTTGCGGCTTCCAAACGAATTGGATCTCACAAGGTTGCGTCAACGTCACTACAAAACAACAATTTGAATCAATCATTCCTCAATCCGCAATTCTCAACATGCAATCCAATTGTAACCAATCAATTGAAGATAATTCTCCCTGTGCTCTTTGTACAACTAGTTTATCTGGTTTGCCTCCTCTTGGTCAATCCATCGGTAACCTCTCTGATTGCATTGGTTACCCTTCCATCTACGCTGCTGCTTTTTCAAATCAATTTGGACCGTCGGATCCTGGTACTGCTAAGTGTTTGTTTGCCCTTGATTTCACCTCTGGAAGTTCTTCTGGTAATAAGAAAAAGGTTGTTGTTATTGTTGTGTCAGTTGTTTCTGCTTTGGTTCTTTTGTTGATAATTATAGGGGTTTGGGTTTATTGGAAATTTAATGATAAGGCAATTGGGGATGATAAGGATCATGGTGTTAATATCGGTGAGGCGGGTTCGGTTTCTGGGTTGGAAACAATGGATCATAGTACTACTTTAATTAGATTCAGTGTTGACGATATTAAGAAGGCGACAAAGAATTTTCATAGAGATAATATAATTGGGAAAGGGGGTTATGGAAATGTGTATAAAGGGCTATTGTCGGATGGAAGTGAAGTTGCTTTCAAGAGGTTTAAGAATTGTTCTGCGGCTGGTGATTCTAGTTTCACTCACGAGGTTCAAGTTATTGCTAGTGTTAGGCATGTGAATCTTGTTGCTTTGAGAGGTTATTGTAGTGCGACGACACGTTTAGAGGGTTATCAGAGGATTATTGTTTGTGATTTGATGAAAAATGGGAGTCTTCATGATCATTTGTTTGGTTCTATTGGGGCGAAACTTAGTTGGCCGGTTCGTCAGAAGATTGCGCTTGGAACTGCTAGGGGATTAGCTTATTTGCATTACGGAGCTCAACCTGCTATCATTCATAGGGATATTAAAGCGAATAATATACTTTTGGATGATAAGTTTGAAGCTAAGGTCGCTGATTTTGGACTTGCAAAGTTTAATCCTGAAGGAATGACTCATATGAGTACAAGGGTGGCTGGAACTATGGGATATGTTGCGCCCGAGTATGCTTTGTATGGACAATTAACAGAAAGGAGTGATGTGTTTAGTTTTGGTGTTGTGCTTCTTGAGCTATTGAGTGGACGAAAGGCTCTTCAAACGAACGATGATGGACAACCTTCTGCTTTGACTGATTGGGCTTGGTCGTTGGTTAGAACGGGAAAGGCGTTGGATGTTATAGAAGATGGGATGCCAGAACAAGGTTCAAATCAAGTTCTTGAGAAGTATGTGTTGATTGCTGTGCTTTGTTCTCATCCACAGTTATATGCTAGGCCAACAATGGATCAGGTTGTGAAAATGATGGAGACTGAAGATGAACTAGTTCCATCGATACCTGGACGGCCGATTCCTCTTGTTGCTGCGAGGCTTGATATTGAGAGATCTATAAGCAGTAGTGGCGGCTCCGGTCAGCTATCTAGTCCAACGGGTTATCAATCGTTCACTTTAGAAATGGGAAGTGAACGCTACTCTTCTAGTCATTTAAGGGAAGAAAGAAGCTCAGCCTCTAGGATTTTGAGTTCGGATTTGGATGAGTGA 1920 0.4292 MNIFIFLFATLLTTLPHPSLSATCPLNFTLLTILTGAASTPPSSFTSTPCQFVHQALRLVQSDYLRRTDFFLPPLNSSIPCWNSFQSYINQFAPKFDIRSSCGFQTNWISQGCVNVTTKQQFESIIPQSAILNMQSNCNQSIEDNSPCALCTTSLSGLPPLGQSIGNLSDCIGYPSIYAAAFSNQFGPSDPGTAKCLFALDFTSGSSSGNKKKVVVIVVSVVSALVLLLIIIGVWVYWKFNDKAIGDDKDHGVNIGEAGSVSGLETMDHSTTLIRFSVDDIKKATKNFHRDNIIGKGGYGNVYKGLLSDGSEVAFKRFKNCSAAGDSSFTHEVQVIASVRHVNLVALRGYCSATTRLEGYQRIIVCDLMKNGSLHDHLFGSIGAKLSWPVRQKIALGTARGLAYLHYGAQPAIIHRDIKANNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQTNDDGQPSALTDWAWSLVRTGKALDVIEDGMPEQGSNQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETEDELVPSIPGRPIPLVAARLDIERSISSSGGSGQLSSPTGYQSFTLEMGSERYSSSHLREERSSASRILSSDLDE* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3882 639 CDD STKc_IRAK 294 563 - -
Psa6g3882 639 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 10 619 - -
Psa6g3882 639 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Psa6g3882 639 PANTHER OS01G0253100 PROTEIN 10 619 IPR045271 GO:0004714|GO:0006468
Psa6g3882 639 MobiDBLite consensus disorder prediction 617 639 - -
Psa6g3882 639 SMART serkin_6 288 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3882 639 Gene3D Phosphorylase Kinase; domain 1 257 367 - -
Psa6g3882 639 MobiDBLite consensus disorder prediction 616 639 - -
Psa6g3882 639 Gene3D Transferase(Phosphotransferase) domain 1 369 569 - -
Psa6g3882 639 ProSiteProfiles Protein kinase domain profile. 288 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3882 639 Pfam SPARK 21 157 IPR043891 -
Psa6g3882 639 Pfam Protein kinase domain 288 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3882 639 SUPERFAMILY Protein kinase-like (PK-like) 271 576 IPR011009 -
Psa6g3882 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3882 Psa-Chr6 338921690 338923609 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3882 21 610 Receptor kinase-like Gene Family AT2G48010 64.250 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Psa6g3882 Pkinase 6.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3882 - - gmx:100800760 919.457