Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3880 ATGGCCAAGGAAAAGGTGGATTCACCTGTTACAGTTCTTGAGGACTATTTCAAAAGTTCAGATTCAGAAACAAGTTCTTCCAAAGAACCTACTTTGGATTCTGATTCTCATCAGGATCACATTTCAAAACCTGTTTCAAGGTGGCATTCGTTTCTTCAATTGGTCAAAACAGGATCAAAGAAACAGTTACCATCAACATTGCATCAACCTCTTGATGGACAACTCTCAAGAAGAATGAGTAGAAGCATGAGGGATACCATTCTTCCAAGTTGTCTCACTCTCACAAGTGCAACTTCTACCCCTTGTAGATCACCATGGAAGATTTTTTCTCATCATGATATACAACTTGCAACCAACTATTTCAGCCCAGAAAATTTGATTGGAAAAGGTGGTTATGCTGAGGTTTACAAGGGGTGTTTACCGAATCATCGGTTAGTAGCAATCAAACGGTTAACAAGAGGAACTCCTGATGAAATTATAGGAGACTTTTTATCAGAACTTGGTGTAATGGCGCATGTTAACCATCCTAATACTGCTAAGCTTGTTGGCTATGGAGTGGATGGAGGAATGTATCTAGTTCTTGAGTTGTCTGAAAAAGGAAGTCTAGCTTCAGTGCTATATGGTTCCAAGGAGAAAGTACCATGGTGTATTAGGCACAAAATTGCATTAGGAACAGCCAATGGTGTACTATATCTTCATGAGGGTTGTCAAAAAAGATTTATCCATAGAGATATAAAAGCTGCCAATATCTTGCTCACAGAAGACTTTGAGCCTCAGATTTGTGATTTTGGGCTAGCAAAATGGCTGCCAGAGAATTGGACTCACCATAACGTTTCAAAATTTGAAGGAACTTTTGGTTACCTTGCTCCTGAGTATTTGCTTCATGGCATAGTGGATGAGAAAACCGATGTATTTGCCTTTGGTGTATTGCTCTTAGAATTGGTCAGTGGGAGAAGAGCACTTGATTATTCACAACAAAGCCTTGTTTTGTGGGCAAAACCTTTGTTGAAAAAGAATGATATTATGGAGCTTATAGATCCTTCACTAGCAGGTGAATTCGACTATAGGCAGATGAATCTTATGCTCTTGACAGCTTCTTTATGCATACAACAGTCCTCCATTCGCCGTCCCTCTATGAGACAGGTTGTTCAGCTTCTGAGTGGAAACCTTAGTTGCTTCAAGACCATGAAGAAAACTCGATTGCCATTCTTTCGAAGAGTCTTTCGGGAAGAGCTTATTGATTCTGATTAG 1251 0.3973 MAKEKVDSPVTVLEDYFKSSDSETSSSKEPTLDSDSHQDHISKPVSRWHSFLQLVKTGSKKQLPSTLHQPLDGQLSRRMSRSMRDTILPSCLTLTSATSTPCRSPWKIFSHHDIQLATNYFSPENLIGKGGYAEVYKGCLPNHRLVAIKRLTRGTPDEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKVPWCIRHKIALGTANGVLYLHEGCQKRFIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHNVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDPSLAGEFDYRQMNLMLLTASLCIQQSSIRRPSMRQVVQLLSGNLSCFKTMKKTRLPFFRRVFREELIDSD* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3880 416 PANTHER OS08G0249100 PROTEIN 3 414 - -
Psa6g3880 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Psa6g3880 416 Gene3D Transferase(Phosphotransferase) domain 1 198 400 - -
Psa6g3880 416 Pfam Protein kinase domain 124 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3880 416 ProSitePatterns Protein kinases ATP-binding region signature. 127 149 IPR017441 GO:0005524
Psa6g3880 416 Gene3D Phosphorylase Kinase; domain 1 90 195 - -
Psa6g3880 416 PANTHER PROTEIN KINASE FAMILY PROTEIN 3 414 - -
Psa6g3880 416 MobiDBLite consensus disorder prediction 17 39 - -
Psa6g3880 416 SUPERFAMILY Protein kinase-like (PK-like) 99 386 IPR011009 -
Psa6g3880 416 ProSiteProfiles Protein kinase domain profile. 121 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3880 416 SMART serkin_6 121 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3880 Psa-Chr6 338805121 338808270 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3880 109 388 Receptor kinase-like Gene Family AT1G53420 40.972 6.11e-66 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Psa6g3880 Pkinase 2.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3880 - - gmx:100780587 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3880 6 338805121 338808270 Psa6g3405 6 291551940 291554476 ECH
Psa6g3880 6 338805121 338808270 Psa6g3880 6 338805121 338808270 ECH
Psa1g4254 1 337701790 337705120 Psa6g3880 6 338805121 338808270 ECH