Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3874 ATGGCTCCTTCAAAGGTGGACAAGCCAAAGAAAGCTGATCCCAAAGCTCAGGCCTTGAAGACAGCCAAGGTTGTGAAGTCAGGTGGCCAAGTGATTAAGAAGAAAGCAAAGAAGATCAGAACAACCGTCACATTTCACAGGCCAAAGACACTGTCGAAGGAAAGAAACCCCAAGTATCCTCGCATTAGTGCAACACCAAGAAACAAGTTGGACCACTATCAAATACTTAAGTTTCCTCTAACTACTGAGTCTGCAATGAAGAAAATTGAAGATAACAATACACTTGTTTTTATTGTTGACCTCCGCGCCGACAAAAAGAAAATTAAAGATGCTGTGAAGAAAATGTATGACATTCAGGCCAAGAAAGTGAACACTTTGATCAGGCCTGATGGCACGAAGAAAGCCTATGTTCGGTTGACTCCAGATTACGATGCACTGGATGTTGCCAACAAAATCGGTATCATTTAA 468 0.4188 MAPSKVDKPKKADPKAQALKTAKVVKSGGQVIKKKAKKIRTTVTFHRPKTLSKERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3874 155 Gene3D - 36 155 IPR012677 -
Psa6g3874 155 Hamap 50S ribosomal protein L23 [rplW]. 75 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Psa6g3874 155 TIGRFAM uL23_arch: ribosomal protein uL23 79 155 IPR019985 GO:0003735|GO:0005840|GO:0006412
Psa6g3874 155 MobiDBLite consensus disorder prediction 1 20 - -
Psa6g3874 155 ProSitePatterns Ribosomal protein L23 signature. 133 148 IPR001014 -
Psa6g3874 155 MobiDBLite consensus disorder prediction 1 17 - -
Psa6g3874 155 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 155 - -
Psa6g3874 155 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 72 148 IPR012678 GO:0003735|GO:0005840|GO:0006412
Psa6g3874 155 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Psa6g3874 155 Pfam Ribosomal protein L23, N-terminal domain 15 64 IPR005633 -
Psa6g3874 155 Pfam Ribosomal protein L23 75 137 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3874 Psa-Chr6 338577966 338580584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3874 1 155 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.097 5.96e-69 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3874 K02893 - gmx:100777933 275.789