Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3862 ATGAAATGCGATGATGATGATTCCTGGAAACTAAGTTCTACGATACTATCATCTGTTCCTAAAGAGGTTCCGTGGTATCTGGATGATGGGACTGATCGCGTGCATGTGGTTGGAACTCGTGGTGCCACTGATTTTGTATTACCTGCTGAAAACTCAACATTTGAAGAATCAGGCCGGACACTTGTATGTGAAACCTTTGATAATCGCAGACGCGAAAAGACGATTGGATTCAAGAGGATTGAACGGGGACTTCCAGTTGGAACTTCCTTGAATGTTGTTTGGATTTTTACTGGATTTTTGGTAGGCCTTAGTTTGTGTGGGGTTATTATTTTGTATGATGAAAGAGATACTGGAATAAAACTTGTCTTTCCCTTTTAA 378 0.4048 MKCDDDDSWKLSSTILSSVPKEVPWYLDDGTDRVHVVGTRGATDFVLPAENSTFEESGRTLVCETFDNRRREKTIGFKRIERGLPVGTSLNVVWIFTGFLVGLSLCGVIILYDERDTGIKLVFPF* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3862 125 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 2 93 - -
Psa6g3862 125 PANTHER - 2 93 IPR044231 GO:0004842|GO:0016567
Psa6g3862 125 Pfam E3 Ubiquitin ligase 8 93 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3862 Psa-Chr6 336646566 336647189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3862 1 93 C3H Transcription Factor Family AT1G63900 51.613 2.74e-26 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3862 K15688 - gmx:100800734 109.768