Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3860 ATGTCTGACCAAAATACTGAGAGAATCCAAGAGCTTAACCTAACCATGGCACCACAAGTGCCACACCAAACACTAGAAACTAATACCACAAAAATCAATAACCACCCTTCGTCCTCAAACACCATTCGACGTCCTCGGGGTCGTCCACTTGAATCCAAGAACAAAGTTAAGACATCTATCACTGAAACACGTGATAATGTACTTTATTCTCATAAGCTTGAGATCACTAGTGGATCTGACATAGTAAGTAGTATCTTTGGTTACGTTCATCATCGAGGAAGGGGAATATGCATCCTTGGTGGAAAAGGAGTGGTGGAAAAAGTCACTATTCGTCAATCCACAGGAAAAGTTATAACTCTCCAAGGAAGGTTCCAGATTATTTCGATATCTGGTATAATTCACTCACCGACAACGCCAGGGGATGCTGAAGGATTGATGGTTAACTTGTCAGGAACTACAAGACAAGTGGTTGGAGGGATTGTGATTCCCCCTCTGATGGCTTTAGGCTCAGTGGAATTGATGGTTGCTTCCTTCGCAAACTCTGGATCTGAAAGAGTTTCTTTGGTGACAAATGAACAAGATGATCCTCCTTTGTTTAACGCTGGAGGATCAACTAATGGGATGAGGAATATGATGAATATCGACCTCAATTTCCCGTCCTCCTCTGCTCAGGGTTGTAGTGTTGCAGCTGTAACTTCACCATCCAAATCTCCCGCTTCTAGCTAA 726 0.4298 MSDQNTERIQELNLTMAPQVPHQTLETNTTKINNHPSSSNTIRRPRGRPLESKNKVKTSITETRDNVLYSHKLEITSGSDIVSSIFGYVHHRGRGICILGGKGVVEKVTIRQSTGKVITLQGRFQIISISGIIHSPTTPGDAEGLMVNLSGTTRQVVGGIVIPPLMALGSVELMVASFANSGSERVSLVTNEQDDPPLFNAGGSTNGMRNMMNIDLNFPSSSAQGCSVAAVTSPSKSPASS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3860 241 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 186 - -
Psa6g3860 241 ProSiteProfiles PPC domain profile profile. 65 202 IPR005175 -
Psa6g3860 241 PIRSF ESCAROLA 1 240 IPR014476 GO:0003680
Psa6g3860 241 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 29 26 199 - -
Psa6g3860 241 MobiDBLite consensus disorder prediction 28 45 - -
Psa6g3860 241 Gene3D - 70 192 - -
Psa6g3860 241 MobiDBLite consensus disorder prediction 28 58 - -
Psa6g3860 241 Pfam Plants and Prokaryotes Conserved (PCC) domain 71 179 IPR005175 -
Psa6g3860 241 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 199 IPR014476 GO:0003680
Psa6g3860 241 CDD DUF296 71 178 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3860 Psa-Chr6 336514778 336515730 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3860 37 188 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 47.273 4.99e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3860 - - cam:101492608 175.637