Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3853 ATGTCTGACTTGTCCGCCACCGGTGATAATCTGAGTCAATCCACAGCCGTTGATATAACCGGCAAGGTCATGGTTGTTATCATCGTTATTCTCTTCATGTTTGTTGTTATTTTTCTTTTCTTCCATCTTTTTGCAAAGGGATTCTGGTGGTCCCATAATAGTCAGGCAGACAACAATTCCCAATCCCGACGCCGCCGCCGCCATGGTCAACAGGGTGCCGTTCTTGGAGAAGGAGGTCTTGATCCTTTGATACTCAACTCCCTGCCGGTATCGGTATTCAATTCGGAAAAAGATGGTTTGGATTTGGAGTGTTCAGTTTGTCTATCTGAACTAGTTGAAGGAGAAAAAGTGAGGGTTTTGCCTAAATGCAATCACAGGTTTCATATAGATTGCATCGATATGTGGTTCCAATCTCATTCAACCTGCCCTCTTTGCAGAACAACACTAGCCGCCTCTCCTTCCTCTTCCCTAGTAGTTGAAATACAACCATCCTCTGCTGCTGCTTTTCCCACAAATGTTTTGATATGGGGAAACCACGACCAAACTATCTCTTCTACTTCGGAACAAAACAATTGTTCTTCTTCTTCCTCTTCATCCGAGGGAACAAGTGAGGATGGAATGTTGAGGATTGATATACCCAATCACAATGAGGCAACTAGTTCATCATCATCTTCATCCTCGCCCACCGGAGGAGGAGGAGGAGGAGGAAGATTAAGGTCGTTGAAGAGGCTTTTAAGCAACAGCAGACTAAATCCATGGAGTCCAACTGCTGCTGCTACTACATCTCTACCAAAGGAATCAGCAGCAGGACACAGCTGA 819 0.4505 MSDLSATGDNLSQSTAVDITGKVMVVIIVILFMFVVIFLFFHLFAKGFWWSHNSQADNNSQSRRRRRHGQQGAVLGEGGLDPLILNSLPVSVFNSEKDGLDLECSVCLSELVEGEKVRVLPKCNHRFHIDCIDMWFQSHSTCPLCRTTLAASPSSSLVVEIQPSSAAAFPTNVLIWGNHDQTISSTSEQNNCSSSSSSSEGTSEDGMLRIDIPNHNEATSSSSSSSSPTGGGGGGGRLRSLKRLLSNSRLNPWSPTAAATTSLPKESAAGHS* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3853 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 151 IPR013083 -
Psa6g3853 272 MobiDBLite consensus disorder prediction 186 205 - -
Psa6g3853 272 MobiDBLite consensus disorder prediction 216 231 - -
Psa6g3853 272 Pfam Ring finger domain 103 146 IPR001841 -
Psa6g3853 272 SUPERFAMILY RING/U-box 84 151 - -
Psa6g3853 272 MobiDBLite consensus disorder prediction 186 204 - -
Psa6g3853 272 MobiDBLite consensus disorder prediction 216 272 - -
Psa6g3853 272 CDD RING-H2_EL5_like 103 146 - -
Psa6g3853 272 PANTHER RING-H2 FINGER PROTEIN ATL3 6 252 - -
Psa6g3853 272 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 252 IPR044675 -
Psa6g3853 272 MobiDBLite consensus disorder prediction 244 272 - -
Psa6g3853 272 SMART ring_2 104 145 IPR001841 -
Psa6g3853 272 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3853 Psa-Chr6 335760517 335762200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3853 6 251 C3H Transcription Factor Family AT1G53820 35.082 4.17e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3853 - - mtr:MTR_7g117540 275.404