Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3842 ATGTCGTTTAGGAGTATGATTATGGATAGGAAGGGATTTGAGATGAAATTTGGGTATAGTATGAGATCAAAGTCACAGTCACACTGTGATGTTAATGTTACCGATAGTTCTTTGGTGGTTGATGGATTGAAGCAGAGTTGTTGGGCTAATATGCCTCCTGAGCTTTTGAGGGATGTGCTAATGAGAATCGAAACCTCGGATGATGCTTGGCCTGCCCGGAAAAATGTTGTTGCATGCGCCGGTGTTTGTCGGAGTTGGAGAGAACTCATGAGGGAAATTGTTAAACCTCCTCAAGCATCCAGCAAGTTGACATTCCCTATATCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTCATTCAGTGCTATATCAAACGAAATCGTAACTGTCAAACATATTATCTTTTTCTCTGTTTAAACCAAGCCTCAACTGATGACGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGGCGTGCAACCCACACTGATTATATCATTTCTCTAAACCTCGATGATGTATCAAGAGGGAGTAGCACCTATGTTGGGAAATTGAGATCAAACTTTCTGGGCACCAAATTTACTGTGTATGATGCACACCCTCCAATTTATGGAGCCAAAGTTGCGAAGTCTCGTTCCACCAAGCTAGTTAGTCTCAAACAAGTGTCTCCAAGAGTTCCTGCAGGCAACTATCCCATCGTGCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGACCTAGGATAATGCAATGTGTTATGGATGCCATCCCTGCCGCCGCTGTTGAACCTGGAGGCGAGGCCCCGACACAGACTCGATTTCTTCACAGCAGAAATGATACTTCTCCATCGATTCCATTCTTCCGATCAAAATCAACCCGCGCAGAGAATCTCCAATCCATTGTACCTTTGACTAGTCAAGATGAGGGAATGCTGGTGTTAAGAAACAAGGCTCCTAGGTGGCATGAACAACTCCAATGCTGGTGTTTGAACTTCAACGGACGTGTGACAGTTGCTTCAGTTAAAAATTTCCAGTTGGTTGCTTCTCCTAAGAACGGAGTTTCTGAGCAGGCCCAAGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAGGATGTATTTACCATGGATTACCAGTATCCAATCTCTGCATTTGAAGCATTTGCAATATGCCTTAGCAGCTTCGACACCAAGATTGCTTGCGAATGA 1206 0.442 MSFRSMIMDRKGFEMKFGYSMRSKSQSHCDVNVTDSSLVVDGLKQSCWANMPPELLRDVLMRIETSDDAWPARKNVVACAGVCRSWRELMREIVKPPQASSKLTFPISLKQPGPRDSLIQCYIKRNRNCQTYYLFLCLNQASTDDGKFLLAARKCRRATHTDYIISLNLDDVSRGSSTYVGKLRSNFLGTKFTVYDAHPPIYGAKVAKSRSTKLVSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPAAAVEPGGEAPTQTRFLHSRNDTSPSIPFFRSKSTRAENLQSIVPLTSQDEGMLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3842 401 SUPERFAMILY Tubby C-terminal domain-like 97 401 IPR025659 -
Psa6g3842 401 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 400 - -
Psa6g3842 401 SUPERFAMILY F-box domain 39 91 IPR036047 GO:0005515
Psa6g3842 401 Gene3D Tubby Protein; Chain A 106 401 IPR025659 -
Psa6g3842 401 Pfam F-box domain 48 94 IPR001810 GO:0005515
Psa6g3842 401 PANTHER TUBBY-RELATED 1 400 - -
Psa6g3842 401 Pfam Tub family 109 396 IPR000007 -
Psa6g3842 401 ProSitePatterns Tub family signature 2. 386 401 IPR018066 -
Psa6g3842 401 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Psa6g3842 401 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Psa6g3842 401 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Psa6g3842 401 PRINTS Tubby superfamily signature 313 330 IPR000007 -
Psa6g3842 401 PRINTS Tubby superfamily signature 331 347 IPR000007 -
Psa6g3842 401 PRINTS Tubby superfamily signature 358 377 IPR000007 -
Psa6g3842 401 PRINTS Tubby superfamily signature 379 401 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3842 Psa-Chr6 334427309 334431585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3842 1 401 TUB Transcription Factor Family AT2G47900 72.330 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Psa6g3842 Tub 4e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3842 K19600 - gmx:100809257 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3842 6 334427309 334431585 Psa6g3842 6 334427309 334431585 ECH