Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3836 ATGACGTCCAATGAGGGATTTCTGACTGAAGGACAGAGGGAGATGTTGAAAATTGCTAGTGAAAATATAGAGAGTTTGTCGGCTTTATCGTCTTCGCCCAAGTCACCGTCGTCCTTGCTTGCTGATCATCACATCAAAGCTCCCGTTGGTGGTAAGGCTCAGACTGCTGGGATTGCTGTGAGGCATGTCCGAAGGATGATTTGTGCTTGTTTTGAGTATCATGGCGGGCTTGCTGAAAGGGTTGGATTCAAAGCAAAAGCTCCTATATCTCTTCCTATGGATACCTTCAAAAGCTATATTCTCAAGGAGCCTATTGGTGTTGTTCGCGTTAATAACTCCATGGAACTATCCTTTCTTAATGGCAACTTGGAAAATTGCTCCGGCTCTGGCGGCTGGTTGCTTGCAATATTGAAGCCGTCTGAATTGGCATCTGTGACCTGTTTGGAGTTAGGCGAATATGCAAAGAAATTGGCCTTCCTCATGATTTCTTTTACTGGTAGCTCAGCAACTGGGAGCAAGATTATGACAACTGCGGCACAGCTAGTCAAGCCTGTTTCACTAGAGCTTGGTGGAAAGAGCCCGATCGTTGTTTTTGAGGATGTTGACCTTGATAAGGTTGCTGAGTGGACTGTCTTTGGCTGTTTCTTTACTAATGGTCAGATATGCAGTGCAACATCTCGACTTATTGTGCACGAAAGTATAGCCGTAGAATTTGTGGATAAACTTGTCAAATGGGCCGAAAACATCAAAATTTTGGATCCGTTGGAAGAAGGTTGCAGGCTTGGACCTATTGTCAGTGAAGCACATGTATGTTTTTCTGTTTATCAATTCTGTATACATGAGATGTTACTTAGCTTACCACATGATGTTAAACACACACATCAGTTATTGTAG 894 0.434 MTSNEGFLTEGQREMLKIASENIESLSALSSSPKSPSSLLADHHIKAPVGGKAQTAGIAVRHVRRMICACFEYHGGLAERVGFKAKAPISLPMDTFKSYILKEPIGVVRVNNSMELSFLNGNLENCSGSGGWLLAILKPSELASVTCLELGEYAKKLAFLMISFTGSSATGSKIMTTAAQLVKPVSLELGGKSPIVVFEDVDLDKVAEWTVFGCFFTNGQICSATSRLIVHESIAVEFVDKLVKWAENIKILDPLEEGCRLGPIVSEAHVCFSVYQFCIHEMLLSLPHDVKHTHQLL* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3836 297 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 191 270 IPR016163 GO:0016620
Psa6g3836 297 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 66 157 IPR016162 GO:0016491
Psa6g3836 297 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 67 157 - -
Psa6g3836 297 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 161 269 - -
Psa6g3836 297 SUPERFAMILY ALDH-like 67 270 IPR016161 GO:0016491
Psa6g3836 297 Pfam Aldehyde dehydrogenase family 160 270 IPR015590 GO:0016491
Psa6g3836 297 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 67 157 - -
Psa6g3836 297 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 161 269 - -
Psa6g3836 297 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 161 190 IPR016162 GO:0016491
Psa6g3836 297 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 187 194 IPR029510 GO:0016491
Psa6g3836 297 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 215 226 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3836 Psa-Chr6 333974547 333978314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3836 67 269 Aldehyde Dehydrogenase Gene Family AT1G74920 54.825 3.57e-80 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3836 K00130 - gmx:100170731 260.381