Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3825 ATGGACTTGTACGGCCGGAGCCCCACTAGAAATGGATCCAACCCGCTTAGTCAACAACATGAATGGCGTTCACCGACAGCTGAAGCTGCTCTCGGAGAGTCGATGTGGCATTTGACGCTTGGTGGTGGTGGTGGTGGTGAATCTTACCCGGAGAGACATGGTGTGCCTAATTGTGCTTATTATATGAGAACTGGGTTTTGTGGTTATGGTGGCAGGTGTCGTTTCAATCACCCCCGTGATCGAGCTGCGGTTGCTGCTGCCGTAAGAGCTACAGGGGACTACCCAGAACGGCTTGGGGAACCTCCGTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGCGCGTCCTGTAAATTCCACCATCCCAAAAATGGAGGGGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCATTACGTCCGGGTGAGAATGAGTGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGCGTAACATGTAAATTCCACCATCCTCAACCTGCAGGCACGTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAATCTCCAACTGTTCCTCTGCCCGAGCAGTTTGGAGGAGCTTCCACAAGCTTGAGAGTGGCTAGACCTCCTGTGTTACCCGGTTCATATGTACAGGGAGCTTATGGTCCTGTGCTTCTTTCCCCAGGGGTTGTTCCTTTTCCTGGATGGAGTCCTTATTCGGCTCCTGTAAGTCCCGTGTTATCTCCTGGTGCGCAACCTGCTGTCGGGGCTACTTCTCTATATGGAGTGACCCAGTTGTCGTCATCGACATCAGCTTTTGCTAGACCTTATACTCCTCTGCCATCTTCTCCCGGCCCTGCAGGAAGCAGTCTGCAGGAAAAAGTATTTCCTGAAAGACCTGGCGAACCGCTCTGCCAATACTATCTGAGAAACGGGGACTGTAAATTTGGATTGGCTTGTCGATATCATCATCCACAGGACCACGCTGCTGCACGGCCAGTTCTTAGTCCCATTGGTCTTCCTCTACGCCCGGAAGGATCTCGATTTTGA 1053 0.5014 MDLYGRSPTRNGSNPLSQQHEWRSPTAEAALGESMWHLTLGGGGGGESYPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRAAVAAAVRATGDYPERLGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGENECSYYLKTGQCKFGVTCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQFGGASTSLRVARPPVLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSPGPAGSSLQEKVFPERPGEPLCQYYLRNGDCKFGLACRYHHPQDHAAARPVLSPIGLPLRPEGSRF* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3825 350 SUPERFAMILY CCCH zinc finger 146 171 IPR036855 GO:0046872
Psa6g3825 350 SUPERFAMILY CCCH zinc finger 100 125 IPR036855 GO:0046872
Psa6g3825 350 Gene3D - 95 180 - -
Psa6g3825 350 Gene3D - 45 91 - -
Psa6g3825 350 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 1 347 - -
Psa6g3825 350 PANTHER PROTEIN PHOSPHATASE RELATED 1 347 - -
Psa6g3825 350 MobiDBLite consensus disorder prediction 1 24 - -
Psa6g3825 350 Gene3D - 292 338 - -
Psa6g3825 350 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Psa6g3825 350 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Psa6g3825 350 SMART c3hfinal6 97 124 IPR000571 GO:0046872
Psa6g3825 350 SMART c3hfinal6 52 79 IPR000571 GO:0046872
Psa6g3825 350 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Psa6g3825 350 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Psa6g3825 350 ProSiteProfiles Zinc finger C3H1-type profile. 97 125 IPR000571 GO:0046872
Psa6g3825 350 SUPERFAMILY CCCH zinc finger 303 328 IPR036855 GO:0046872
Psa6g3825 350 SUPERFAMILY CCCH zinc finger 55 81 IPR036855 GO:0046872
Psa6g3825 350 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Psa6g3825 350 MobiDBLite consensus disorder prediction 7 24 - -
Psa6g3825 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 99 124 IPR000571 GO:0046872
Psa6g3825 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 79 IPR000571 GO:0046872
Psa6g3825 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 145 170 IPR000571 GO:0046872
Psa6g3825 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3825 Psa-Chr6 332337288 332341494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3825 20 345 C2H2 Transcription Factor Family AT5G18550 52.199 1.77e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa6g3825 zf-CCCH 3.5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3825 - - gmx:100805017 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3825 6 332337288 332341494 Psa6g3825 6 332337288 332341494 ECH