Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3824 ATGGAGGAAGGTCAGAGTAGTTCAAATTCCATACCTCATTTTCTCTCTAAGACTTTTGAGATGGTTAGTGATCCTTCAACTGATGCCATTGTTTCATGGAGTTCTACCAATAAGAGTTTCATTGTTTGGAATCAGCCTGATTTTTCGAAGAATTTGTTGCCCAAATTCTTTAAACATAATAACTTCTCAAGTTTCATCAGACAGCTTAATACCTATGGCTTTAGAAAAGTTGATCAAGAGCAATGGGAATTTGCAAATGAAGATTTCGTAAGAGATCAACCACATCTTATGAATAATATCCATCGACGCAAACCAGTTCATAGCCATTCTTTGTCTAATGCACATGACAAACGGGTGGTAGCTGCTAGTGCTAGTGGTGCTCCATTAACAGAATTAGAGCGAAGAAATTTGAAAGCCGAGATAGAAAAAATTAAACATGACAAAGAACAACTACTTGTGGAATTTCATATGCAAGAAGAGGAGTGGAAACAAAATGAGATGCAGTTACATTACTCAAAGGATCGTTTGCTAAAGTTAGAACTGAATCAACAAAGTTTACTCTCTTCTGTTGGTCAAGTGTTGCAGAAATCCAAGGAAGAGGTAGGTCTCCAATCAGTAACGGTAAACATGGGGAGAAAACGAAGGTATATGAGACATAGTCCCTTTAATAATTTAGCTGACATTGAAATTCCTTTGAAAACTTCTGAAATGCCATCTAGAGAAAATGTTGATAATGTGTCTATTCTCTCTATAAACATGGAACAATTGAATCTGCTTGAATCATCATTGACGTTTTGGGAGAATTTTGTAAATGATGTTAGCGACACATCTTTTCAAACTCATTCAAACTTAAACTTTGAAGATTCTATGAATTATGGACATAATCCAATAATGTCTTATGTGCAACCAGAATTTAAACTTCATCCCGAGTCACCAGGAAACAACATGAACTCTCTGCAAGATTTGGTCGCTATTACTGATCCTGATCTTGTTAAACTTAAGCCACATGACATCTTTGTTCAAGATCCTATTTCACCAGAGACAAATGTTATTGCCGTTTCTGATTCTATTGCACCTGAGCCAACTTTTATCGATAATCCTAACTTCGTTGCACCGAAAGAACAACCTGTTGCAACAACCCCAATTACTATCGGATATAATTCACCATTTTGGCAAAAATTCTTGGTGGAAGATTCAGATTTAGATGAGTAA 1212 0.3606 MEEGQSSSNSIPHFLSKTFEMVSDPSTDAIVSWSSTNKSFIVWNQPDFSKNLLPKFFKHNNFSSFIRQLNTYGFRKVDQEQWEFANEDFVRDQPHLMNNIHRRKPVHSHSLSNAHDKRVVAASASGAPLTELERRNLKAEIEKIKHDKEQLLVEFHMQEEEWKQNEMQLHYSKDRLLKLELNQQSLLSSVGQVLQKSKEEVGLQSVTVNMGRKRRYMRHSPFNNLADIEIPLKTSEMPSRENVDNVSILSINMEQLNLLESSLTFWENFVNDVSDTSFQTHSNLNFEDSMNYGHNPIMSYVQPEFKLHPESPGNNMNSLQDLVAITDPDLVKLKPHDIFVQDPISPETNVIAVSDSIAPEPTFIDNPNFVAPKEQPVATTPITIGYNSPFWQKFLVEDSDLDE* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3824 403 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 401 IPR027725 -
Psa6g3824 403 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g3824 403 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 401 - -
Psa6g3824 403 Coils Coil 129 161 - -
Psa6g3824 403 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Psa6g3824 403 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g3824 403 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g3824 403 Gene3D - 6 104 IPR036388 -
Psa6g3824 403 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g3824 403 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g3824 403 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3824 Psa-Chr6 332297768 332300256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3824 7 302 HSF AT4G18880 47.386 1.28e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa6g3824 HSF_DNA-bind 1.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3824 K09419 - gmx:100820566 380.178