Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3821 ATGGGTGATAACAAAGGCAAAAATCCAGACAGAGAACTCCTTAAGTACAACAACAATTTCACATCTGATGGAGATCACGATGTAATCAAAGAACAAGATCGTTTGCTTCCAATAGCTAATGTTGGTCGCATCATGAAACAAATCTTGCCTCCAAATGCAAAAATCTCCAAAGAAGCTAAAGAAACCATGCAAGAGTGTGTCTCAGAGTTTGTTAGTTTTGTAACTGGTGAAGCTTCTGACAAGTGTCACAAAGAGAAACGAAAGACGGTGAACGGTGACGATGTTTGTTGGGCCATGGCTACGCTAGGGTTTGATGATTATGCTGAGCCACTCAAAAGGTATTTGTACAAGTATAGGGAGTTGGATGTGGAAAGAGGTAATAACCAAAATAAAGGTAATGAAATTGAAACATATAATAATTATGATGGTAAGGAACAACAAAGTCCAAGGAAAGGTTCCTCTTCTATGTTCAATAATAGGAACAGTGGTCCTCAGACTAAGGGATTTTGA 510 0.3843 MGDNKGKNPDRELLKYNNNFTSDGDHDVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCWAMATLGFDDYAEPLKRYLYKYRELDVERGNNQNKGNEIETYNNYDGKEQQSPRKGSSSMFNNRNSGPQTKGF* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3821 169 MobiDBLite consensus disorder prediction 123 169 - -
Psa6g3821 169 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
Psa6g3821 169 Gene3D Histone, subunit A 25 162 IPR009072 GO:0046982
Psa6g3821 169 SUPERFAMILY Histone-fold 32 152 IPR009072 GO:0046982
Psa6g3821 169 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Psa6g3821 169 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Psa6g3821 169 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Psa6g3821 169 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Psa6g3821 169 MobiDBLite consensus disorder prediction 130 169 - -
Psa6g3821 169 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 14 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3821 Psa-Chr6 332029134 332030351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3821 28 132 CCAAT-HAP3 Transcription Factor Family AT2G47810 80.000 3.02e-61 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Psa6g3821 CBFD_NFYB_HMF 5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3821 K08065 - qsu:112003935 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3821 6 332029134 332030351 Psa6g3821 6 332029134 332030351 ECH