Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3808 ATGGCGAGTTCAGATCAATCAGAGAAACCACAACAACCAGTGATGGTAGTTGCAATCGACGAGAGTGAACACAGTGCTTACGCTCTCAAATGGACTCTCGATCATTTCTTCAACGACAACAATTCCCTTTTCAAGCTTGTTCTTCTTCACGCTAGACCTTCCGCTACTTCTTCTGTTGGTCTCGCTGGCCCTGTGTATGCAGGAGCTGCTGAGGTTTTGCCCATGGTCGATTCTGATTTGAAAAGGGTTGCTGCTAGAGTTGCTGATAGTGCTAAACAGCTTTGCATTAAGAAATCGGTAAATGATGTAATAGTGGAGGTGGTGGAAGGTGATGCTAGAAATGTTCTCTGTGATACAGTGGAGAAACACCATGCTTCAATATTGGTTGTGGGTAGTCACGGTTATGGGGCTATAAAAAGGGCGGTTTTAGGTAGTGTGAGTGACTATTGTGCTCATCATGCTCATTGCACCGTGATGATTGTAAAGAAGCCAAAAACCAAGCACTGA 507 0.4458 MASSDQSEKPQQPVMVVAIDESEHSAYALKWTLDHFFNDNNSLFKLVLLHARPSATSSVGLAGPVYAGAAEVLPMVDSDLKRVAARVADSAKQLCIKKSVNDVIVEVVEGDARNVLCDTVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKTKH* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3808 168 Gene3D HUPs 9 168 IPR014729 -
Psa6g3808 168 PRINTS Universal stress protein signature 12 30 IPR006015 -
Psa6g3808 168 PRINTS Universal stress protein signature 122 134 IPR006015 -
Psa6g3808 168 PRINTS Universal stress protein signature 140 162 IPR006015 -
Psa6g3808 168 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 164 - -
Psa6g3808 168 CDD USP_Like 15 161 - -
Psa6g3808 168 Pfam Universal stress protein family 15 162 IPR006016 -
Psa6g3808 168 PANTHER - 11 167 - -
Psa6g3808 168 PANTHER UNIVERSAL STRESS PROTEIN A-LIKE PROTEIN 11 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3808 Psa-Chr6 330635096 330636698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3808 10 151 U-box Gene Family AT5G51270 26.623 1.07e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3808 - - cam:101494457 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3808 6 330635096 330636698 Psa6g3808 6 330635096 330636698 ECH
Psa6g3808 6 330635096 330636698 Psa3g0523 3 49009566 49010365 PCT