Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3806 ATGACTGGACTTTGGAGTGTGTTATGCAGTGAACCTGTTTGTTCAAAGTCTTGCAGTATTTATGATGTTAAGTTTCTCATTGATCCTTCCACATGCATCAACCATTTCTTAATATCTTGCTTTCATGTCTTGCTACTCATCATGCTCCTATTTCTAATGATCATCCACAAGTCGTTATTAAAACCATATCAAGGTCTTATACATAGGGAAAGATATTCTAATTTGCAACTAGTTTCTGCAATAACCAGTGGTGTTCTTGGGTTGGTGCATTTGTTTTTTGGTATTTGGATTTTAGAAGAGAAGTTGAGAAAAAGCCAAACTGCATGGCCTGTTGATTTGTGGTTGCTGGAATTCTTTCAGGGATTAACATGGTTGTTAGTTGGTTTAACATTAAGTCTTAAGTTAAAGCAATTTCCACGAGCATGGTTAAGGGTTTTTTCTATTCTCATGTTCTTGGTTTCTGGTATAAACTGTGCTATGTCTTTGTTTTATGTAATCGGTAGTATACAATTGTCCGTCAAGGTAGCATTAGATATTCTATCTTTTCCTGTGGCAATTTTATTGCTGTTATGCACATATAAGGAATCTAAGTATAGTGACACTGACACAGAAATCGATGAAGGCCTTTACGCACCTTTAAATAGAGAGTCGGATGAAAATGATTCTGTTAGCCATGCGACACTATTTGTAAAAGCTGGATTCTTCAGTAGGATGTCATTTTGGTGGTTGAATTCATTGATGAAGAGAGGTAAAGAGAAAACACTTCAGGACGAAGATGTACCGAAGTTGAGGGAGGAAGATAGAGCAGAAAGTTGTTATTCGCTGTTTCTAGACATATTGAACAAGCAGAAACAGAAGGATCCATCCTCACAACCATCGGTTTTGAAGACAATTGTTTTATGTCATTGGAGAGAAATTTTGATTTCTGGATTCTTTGCACTCCTTAAGGTACTTGCAGTGTCTACTGGACCTATGCTTTTGAATTCCTTTATATTAGTCGCTGAGGGTTATGAGAGTTTCAAATATCAAGGTTTTGTGTTAGCCATAGCACTTTTCTTTATAAAAATTATAGAATCTCTATCACAAAGGCAGTGGTATTTTCGGTCAAGACTCATCGGTCTCAAAGTTAAGTCGCTGCTAACAGCAGCAATCTATAAAAAACAATTCAGGTTGTCCAATTCTGCGAGATCGGCGCACTCTAGTGGTGAGATAATGAATTATGTAACCGTGGATGCTTATAGAATCGGAGAATTTCCGTACTGGTTTCACCAAACATGGACAACAAGCTTCCAACTATGTATCTCGTTGGTTATACTCTTCCGTGCAGTTGGGCTAGCTACAATTGCATCCTTGGTTGTGATAGTTATCACAGTACTTTGCAATACACCACTTGCAAAGTTACAACACAAGTTTCAAAGCAAACTAATGGTTGCACAAGATGAGAGATTGAAGGCTACTTCTGAGGCTCTTGTGAATATGAAGGTACTGAAATTGTATGCATGGGAAACCAGTTTTAAAAACTCTATAGAAGGATTAAGGAATGAGGAACTCAAATGGTTGTCTGCAGTGCAATTGAGAAAGGCATACAACACATTTCTCTTTTGGTCATCACCGGTTTTGGTCTCTGCTGCTACGTTCGGAGCATGTTATTTTCTTAAAGTTCCTTTGCATGCGAATAATGTTTTCACTTTTGTGGCAACTTTACGCCTTGTTCAAGATCCAATCAGAACTATCCCTGATGTTATTGGGGTGGTTATTCAGGCAAAAGTTGCTTTCGCTCGTATTTTAAAATTCCTGGAGGCACCCGAACTGCATAGTGAAAATATTGGGAAGAGGTGTTCAGAAGACAATACAAGAGGTTCAATTTCAATCAAGTCTGCTGAATTTTCATGGGAGAATAATAAAGTATCAAATCCAACATTGAGAAATGTTAATTTGGAAGTAAGACCTGGACAGAAGGTCGCGATTTGTGGTGAGGTTGGCTCAGGCAAATCAACTCTCTTAGCAGCAATTCTCAGAGAAGTTCCTATCACTCAAGGAAAAATTGATGTTTATGGGAAGTTTGCATATGTTTCTCAAACAGCATGGATACAAACAGGTTCAATAAGGGATAATATATTGTTTGGATCACCTATGGATGTTCAAAAATATCAGAAAACTCTTCATAGGTCTTCACTAGTGAAAGATCTTGAGCTGTTTCCTCATGGTGATCTCACTGAAATAGGAGAGAGAGGGGTTAACTTAAGTGGTGGTCAGAAGCAACGAATTCAACTTGCTCGTGCTCTTTATCAGAATGCTGATATATATCTCTTGGACGATCCATTCAGTGCTGTTGACGCACAAACTGCCACAAATTTGTTTAATGAATACATCATGGAAGGACTTGCTGGGAAGACAGTTTTGCTTGTGACTCATCAAGTTGACTTCCTTCCAGCATTTGATTTTGTTTTGTTGATGTCAGATGGAAAAATCCTACAAGCTGCTTCGTATCACCATTTGTTGACCTCAAGCAAAGATTTTCAGGAACTTGTGAATGCTCACAAAGAGACTGCTGGTTCTGACCGGCTTGTGGATGTTACTTCTGAAAGAAATTCAAGTTCTGCCAAAGAGATAAGAAAAACATATGTGGAGAAGGAAAAGCAATTCGAAGCACCAGAAGGAGATCAATTGATTAAACAAGAAGAGAGAGAAACTGGAGACCAGGGGCTTAAACCTTACTTAACATACCTGAGTCAGAACAATGGATACATATACTTCTCCGTGGCTTCTATTTCTCATCTTATATTTTTGATTGGTCAAATATTGCAAAACTCGTGGATGGCTGCTAATGTTGACAATCCTAAAGTCAGCACTTTGAGACTGATTCTAGTTTACTTGTTGATTGGAGTTAGTTCAACAGTGTTCTTATTGATGAGAAGTCTTTTTACAGTTGCTTTGGGCCTTCACTCTTCAAAGTCTTTATTTTTACAGCTACTGAACTCCCTTTTTCGTGCACCTATGACGTTTTATGATTCCACACCTTTGGGACGGATACTTAGTAGAGTCTCTTCTGATCTCAGCATTGTTGATCTCGATGTTCCATTTGGTCTTCTTTTCGCCATGGGAGCTACTAGCAATTGTTATGCTAGTCTAACTGTTTTAGCAGTAGTTACTTGGCAAGTCTTGTTCGTCTCCATACCGATGCTCTATTTTGCACTGCGGTTGCAGAGATACTACTTTGCTTCAGCAAAAGAACTGATGCGGATGAATGGCACAACAAAATCCTTTGTAGCTAACCATCTTGCTGAATCAGTTGCTGGAGCTGTGACAATAAGGGCTTTTGAAGAGGAAGATCGTTTTTTCGCAAAGAACCTTGATCTAATCGATATCAATGCTACTCCCTTCTTTCATAGTTTTGCTGCAAATGAGTGGTTGATTCAACGGTTAGAAACAGGCAGTGCTGTTGTTCTTGCATCTGCCGCACTGTGTATAGCCGTACTTCCACCTGGAACATTTTCCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCACTTAATGCTTCCTTAGTATTTTCAATTCAAAATCAATGCAATATAGCAAATTACATAATATCAGTGGAGAGGCTAAATCAGTATATGCATGTACCAAGTGAGGCTCCTGAAGTAATAGAAGGAAATCGCCCTCCGGTGAATTGGCCAGTTGTTGGTAGAGTAGAAATAAAGGAACTCAAGATACGGTACAGGCATGATGCACCACTAGTACTCCGCGGAATCACATGCACATTTGAAGGAGGACACAAAATTGGTATAGTTGGTCGCACAGGAAGCGGCAAGACCACTCTTATTGGTGCTTTATTTCGTCTAGTCGAGCCAGCAGGTGGGAAAATCATTGTTGATGGCATTGACATTTGTTCTATTGGACTTCATGATTTGAGGTCGCGCTTTGGTATTATACCTCAGGATCCTACTCTTTTTAATGGAACAGTCAGATACAATTTGGATCCATTATTTCAACACTCTGATCAAGAGATATGGGAGGTTCTTGGCAAGTGTCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGGTGGTTTAGACTCATCAGTTGTTGAAGATGGGGCCAATTGGAGCATGGGACAACGACAATTGTTCTGTTTGGGCCGTGCTTTGCTGAGGAGAAGTCGGATATTGGTGCTCGATGAAGCAACCGCGTCAATTGATAATGCAACTGACTTGATTCTGCAGAAAACTATTAGGACCGAATTTGCAGATTGTACGGTAATCACGGTAGCTCACAGGATACCGACCGTGATGGATTGCACAAAGGTTCTTTCCATCAGTGATGGAAAATTAGTAGAGTATGATGAGCCAATGAACTTGATGAAGAGAGAAGGATCTCTGTTTGGGAAGCTTGTCAAAGAATACTGGTCCCATTTTCAATCTGCAGAGTCTCATTAA 4440 0.395 MTGLWSVLCSEPVCSKSCSIYDVKFLIDPSTCINHFLISCFHVLLLIMLLFLMIIHKSLLKPYQGLIHRERYSNLQLVSAITSGVLGLVHLFFGIWILEEKLRKSQTAWPVDLWLLEFFQGLTWLLVGLTLSLKLKQFPRAWLRVFSILMFLVSGINCAMSLFYVIGSIQLSVKVALDILSFPVAILLLLCTYKESKYSDTDTEIDEGLYAPLNRESDENDSVSHATLFVKAGFFSRMSFWWLNSLMKRGKEKTLQDEDVPKLREEDRAESCYSLFLDILNKQKQKDPSSQPSVLKTIVLCHWREILISGFFALLKVLAVSTGPMLLNSFILVAEGYESFKYQGFVLAIALFFIKIIESLSQRQWYFRSRLIGLKVKSLLTAAIYKKQFRLSNSARSAHSSGEIMNYVTVDAYRIGEFPYWFHQTWTTSFQLCISLVILFRAVGLATIASLVVIVITVLCNTPLAKLQHKFQSKLMVAQDERLKATSEALVNMKVLKLYAWETSFKNSIEGLRNEELKWLSAVQLRKAYNTFLFWSSPVLVSAATFGACYFLKVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFARILKFLEAPELHSENIGKRCSEDNTRGSISIKSAEFSWENNKVSNPTLRNVNLEVRPGQKVAICGEVGSGKSTLLAAILREVPITQGKIDVYGKFAYVSQTAWIQTGSIRDNILFGSPMDVQKYQKTLHRSSLVKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAQTATNLFNEYIMEGLAGKTVLLVTHQVDFLPAFDFVLLMSDGKILQAASYHHLLTSSKDFQELVNAHKETAGSDRLVDVTSERNSSSAKEIRKTYVEKEKQFEAPEGDQLIKQEERETGDQGLKPYLTYLSQNNGYIYFSVASISHLIFLIGQILQNSWMAANVDNPKVSTLRLILVYLLIGVSSTVFLLMRSLFTVALGLHSSKSLFLQLLNSLFRAPMTFYDSTPLGRILSRVSSDLSIVDLDVPFGLLFAMGATSNCYASLTVLAVVTWQVLFVSIPMLYFALRLQRYYFASAKELMRMNGTTKSFVANHLAESVAGAVTIRAFEEEDRFFAKNLDLIDINATPFFHSFAANEWLIQRLETGSAVVLASAALCIAVLPPGTFSSGFIGMALSYGLSLNASLVFSIQNQCNIANYIISVERLNQYMHVPSEAPEVIEGNRPPVNWPVVGRVEIKELKIRYRHDAPLVLRGITCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLFQHSDQEIWEVLGKCQLQEAVQEKEGGLDSSVVEDGANWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLSISDGKLVEYDEPMNLMKREGSLFGKLVKEYWSHFQSAESH* 1480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3806 1479 Gene3D - 600 869 IPR027417 -
Psa6g3806 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 927 1196 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g3806 1479 CDD ABC_6TM_ABCC_D2 915 1208 IPR044726 GO:0140359
Psa6g3806 1479 Pfam ABC transporter 641 775 IPR003439 GO:0005524
Psa6g3806 1479 Pfam ABC transporter 1250 1398 IPR003439 GO:0005524
Psa6g3806 1479 CDD ABC_6TM_ABCC_D1 308 595 IPR044746 GO:0140359
Psa6g3806 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1235 1467 IPR003439 GO:0005524
Psa6g3806 1479 Pfam ABC transporter transmembrane region 917 1155 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g3806 1479 Pfam ABC transporter transmembrane region 307 572 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g3806 1479 SUPERFAMILY ABC transporter transmembrane region 295 600 IPR036640 GO:0005524|GO:0016021
Psa6g3806 1479 SUPERFAMILY ABC transporter transmembrane region 904 1213 IPR036640 GO:0005524|GO:0016021
Psa6g3806 1479 Gene3D ABC transporter type 1, transmembrane domain 882 1214 IPR036640 GO:0005524|GO:0016021
Psa6g3806 1479 Gene3D ABC transporter type 1, transmembrane domain 278 599 IPR036640 GO:0005524|GO:0016021
Psa6g3806 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1223 1460 IPR027417 -
Psa6g3806 1479 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524
Psa6g3806 1479 CDD ABCC_MRP_domain2 1231 1451 - -
Psa6g3806 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 846 IPR003439 GO:0005524
Psa6g3806 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 71 1479 - -
Psa6g3806 1479 SMART AAA_5 650 823 IPR003593 -
Psa6g3806 1479 SMART AAA_5 1259 1451 IPR003593 -
Psa6g3806 1479 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 71 1479 - -
Psa6g3806 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 307 587 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g3806 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 846 IPR027417 -
Psa6g3806 1479 CDD ABCC_MRP_domain1 622 823 - -
Psa6g3806 1479 Gene3D - 1217 1468 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3806 Psa-Chr6 330558107 330564568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3806 1229 1479 Calmodulin-binding Proteins AT2G36910 29.572 4.93e-27 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3806 K05666 - gmx:100811468 2449.85