Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3798 AAATTCCATTCAATACAATTTAGTAAACAATCATTCATACTCCAATCAATCCAAGGCATTTGTTTGGCTATAAGGAACGATGAAGAGCTTGGAAAATTGCTTGCTGGTGTTACCATAGCTCGTGGTGGTGGTGTTCTGCCTAACATCAACCCAGTTTGCTTTTGCCAAAGAGGAATGAAAACGCTGCTGCCAGTACTCCCAAGTCTCCTTCAAAGGCCAAGGAAATCTCCAAAGAAGGCAGTAGAAAAGACCACTGCATTTGCACTACTTACTTTAGAGAGGCTGTTGTTTTGTCCAAAACGGATATATGCTATTAACAGAGAGTTTCCGCCGCCGAATGAGCAATTCATTTTAGATTCTGAGCAACTTCAGAGTCAGTTTCGAACCATGAGCAATTACATTTTGTGGCGGAAACTATTCTTATGCCATTTGGTTGCACCATGTAGTGGTCATAGATCACAATCAGATTTTTTGCGAAGCTTGAGCGCCTTCGGCGATGCGGTCAATTCTATCCAACCTGCAATATCACAGCAGTCCCGGTTTCATTTACAAAAGCCACAGCATCAAATAAAGGAACAAAATGCCCTAGTTATGAATAAAAAAATTAGATCCATTATGGCTGAGAGACAGGCTACCATTCTGGAAATTGAACTAGAGGCTGCTATGTCTGAAAAGAATGAAGCCTTGGCTGCTCGAGACGTTGCCCTTAGGCAGAGGGATGAAGCGCTCGCCCAGAGGGATAACGCTCTGTTGGAATGGGATAATGCCCCTTGCAGCCCTACAATGTCGGAATAG 795 0.4327 KFHSIQFSKQSFILQSIQGICLAIRNDEELGKLLAGVTIARGGGVLPNINPVCFCQRGMKTLLPVLPSLLQRPRKSPKKAVEKTTAFALLTLERLLFCPKRIYAINREFPPPNEQFILDSEQLQSQFRTMSNYILWRKLFLCHLVAPCSGHRSQSDFLRSLSAFGDAVNSIQPAISQQSRFHLQKPQHQIKEQNALVMNKKIRSIMAERQATILEIELEAAMSEKNEALAARDVALRQRDEALAQRDNALLEWDNAPCSPTMSE* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3798 264 Gene3D Histone, subunit A 5 61 IPR009072 GO:0046982
Psa6g3798 264 Pfam GAGA binding protein-like family 191 250 IPR010409 -
Psa6g3798 264 PANTHER - 185 256 IPR010409 -
Psa6g3798 264 Pfam C-terminus of histone H2A 28 53 IPR032454 -
Psa6g3798 264 PANTHER PROTEIN BASIC PENTACYSTEINE4 185 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3798 Psa-Chr6 330300503 330301447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3798 186 256 BBR or BPC Transcription factor family AT2G21240 66.667 8.37e-20 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Psa6g3798 GAGA_bind 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3798 - - gmx:100813103 120.938