Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3797 ATGGTTGAAACCAGACGCAGTTCCTCTTCTTCCAAACGTTCCCTTTCTTCTTCTTCTCCTTCAAACACCAAACGATCCAAGGTCTCTGAGGATGTTTCACCCACCGTCAATCCCTCACCGCTGGTCAACGAATCTGGTGAACAGAAGATGCGGTTATCTGATCTGCAAGAAACGGCGTCGTTGAAGGCTGTTGATGGTGACACTGAGAACCACAAGGTGTCTTCTCCTCAGTGTCTAGAATCAGAATCAGGTGGGATTAACTTGAAATCCAAGGTGTTGCCGCCGTTGGCTCGGTCGAAGAAAAGTTGCATAAAATCGAGTCCTAAGGCTGCTTGGGGGAGGCTCATTTCTCAATCTTCTGAGAATCCTCACTTGCCCATATGCGAACCTGTCTACACTGTTGGTCAATGTCGTCAATGTAATTTATGGCTTAAAGATCCCAATGTTAGTAATGTTTTGTGCAAATTGAGCCACATAGAGCATGGAGGTTTTGCATTGCTGGAAGTCATAGGGAGTAAAGGTGAAGTGAAAGTTAACGGAAAGATATATGGGAAGAAATGCCGTCTTATTTTAAGTGGAGGTGATGAAGTTATCTTTGGTTTTTCCGGCGAACAGGCTTATATATTTCAGCAGCTCCATAATAATATCTCTACTGCCAATGTACCGCCTCCTGTGAGCATTTTAGAAGCCCAGGGTGCTCCAATAATTGGAACGCAAATTGAAGCTAAACCTGGAGACCTGTCGGCTGTTGCTGGGGCTTCAATATTGGCCTCTTTTTCTAATTTTAATGAAGATTTATCTCTCATTTCACCCCCTGCTAACACCTGCAAGAACACCCAGCAGAAGACTGACGCTTCATCACTACCTGCTGGCAACGGGGATGATAAGGCAAATGTTGATGTGAAGCACAACACCGTTAATAACGAACTGGATGGAGTTTCTTATGCTGAGGAAACTGGTCGTCTATCCTCTACCACCCTTAATGAAGATCCTATGGTTGATGCTGTAGAAGTCAATGTCAGTGTCGATGCAGATGTTGGGAAGATGACTGCTGCTTCCAGCAAATTGAGACCATTATTCTCTCCTGATTTAGATTTAAGTGGCAAGATTACTAAGATATTGGAAAAAAATAAGGAATTGAAGGAACGCCTTAGAAGTGTTGATACCAGAAATATATTGGCATCACCCAAGCAACAAGCTCTTAAAGATAGTTTACAGATGAGAATTCTCAATGCTGAGAATATTGATGTTTCATTTGAAAGTTTCCCATATTATCTTAGTGACACAACAAAGAATGTTTTGATTGCTTCTGCGTACATTCATTTGAAGTGCAATGACTCTGGAAAATATGTTTCTGACCTTCCATCGCTGTCCCCACGGATATTGTTATCTGGTCCTACCGGCTCAGAAATATATCAGGAGACTCTGTCCATGGCACTTGCAAAGCATTTTGATGCGTGGCTACTAATTGTGGACTCTCTTTCACTTCCTGGTCGGGCACCATTGAAGGAAGTTGAAGCTACTAAAGAAAGTTCAAGGCCTGAAAGACCTGTGTTTATTAAGAGAAGTAGTACTCAGGCTGCTACCGTACAACATAAGAAACCGGCTTCTTGTGTTGATGCCCAAATTATAGGTGGATCCGCAGTAAGTTCACAGTTTATACTGAAGCAAGAAGTTTCTACGGCATCGTCGAAAGGCAGTACTATTAAAGCAGGTGACCGCGTAAAGTTTGTTGGTGACTTCACTTCTACTGTCTCATCACCACAAGTTTTTCCAGCAAGGGGACCAAGCTACGGCTCCAAGGGTAGAGTTCTCATTGCTTTTGAAAACAACCGGTCTTCAAAAATTGGGGTTAGATTTGAGAAATCAATTCCAGATGGAAATGATCTTGGAGGCCTCTGTGAAAATGATCATGGCTTCTTTTGTTCTGCCAATCATTTAGTACTGGTAGATGGTTGTGGAGGGGATGACTCTAGCAAAGTTGCTATTAATGAAATCTTTGAGATTGCTTCTAATCTGAGTAAAAGTGGACCGTTGGTGTTGTTGATTAAAGATATCGAGAAGGGTGTGTCTGGGAATTCAGAGGTTTTGAAAAGTAAATTCGGAAGCTTGCCACAGAATGTTGTAGTAATTGGTTCACATATCCAACCGGACAATCGTAAGGAAAAGACACAACCTGGCAGCCTTCTATTTACAAAATTTGGAGGCAATCAGACAGCACTACTTGATCTTGCTTTTCCGGATAACTTTACTAGACTGCATGATAGGAGCAAAGAAACCCCCAAAGTCATGAAGCAACTCAATAGGCTTTTCCCAAACAAGGTTACGATACAGCTGCCTCAGGATGAGAGTTTACTTTCTGATTGGAAGCAGCAGCTCGATCGTGACACAGAAACTATGAAAGCTCAGTCCAACGTTGCCAGCATTCGCCTAGTCCTCAACAAGTTTGGACTGGATTGCTCTGACCTTGAGACTCTTTGCATCAAAGATCAAACTCTAACAACTGAAAATGTGGAGAAGATCATTGGTTGGGCTATAAGTTATCATTATATGCATTCATCTGAAGTTTCTACCAAAGAATCAAAGCCTGTAATATCTGCAGAAAGCGTTCGGTATGGGTTTAACATTCTACAGGGCATTCAAAATGAGAACAAGAGCACAAAAACATCACTCAAGGACGTAGTTACTGAGAATGAATTTGAGAAAAAACTGCTTGGTGATGTTATTCCCCCAACTGATATTGGGGTCTCATTTGATGATATTGGAGCTTTAGAAAATGTAAAGGACACCTTAAAGGAATTGGTTATGCTTCCTCTTCAAAGGCCTGAGTTATTTTGCAAAGGACAGCTAACTAAGCCTTGCAAGGGAATCTTACTTTTTGGCCCTCCTGGCACTGGAAAAACAATGCTTGCAAAGGCTGTAGCTACTGAAGCTGGAGCAAATTTTATTAATGTTTCCATGTCTAGCATTACTTCAAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCTGGTGAGCACGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAAAAGATAGAGAGCGTGTACTTGTTCTTGCTGCCACAAACAGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCGCGAAGATTGATGGTTAATTTGCCAGATTCAACAAACAGAGCGAAAATTATGAGAGTCATTTTATCAAAAGAAGATTTGGCGCCTGATGTTGATTTAGAAGCATTAGCAAATATGACTGATGGATACTCCGGAAGTGACCTAAAGAATCTGTGTGTCACAGCAGCACATTGTCCGATAAGAGAGATCTTGGTGAAGGAAAAGAAGGATAGAAGCTTTGCATTGGCTGAGAACAAACCTTTACCCGGACTGTGTAGCAGTGCTGACATTCGTTCCTTAAAGATGGAAGATTTTAAATATGCACACGAGCAGGTGTGTGCAAGCGTGTCATCGGATTCGTCAAATATGAACGAACTACTCCAATGGAATGACCTCTATGGAGAAGGTGGATCAAGAAAAAAGACATCTTTGAGCTATTTCATGTAA 3666 0.4171 MVETRRSSSSSKRSLSSSSPSNTKRSKVSEDVSPTVNPSPLVNESGEQKMRLSDLQETASLKAVDGDTENHKVSSPQCLESESGGINLKSKVLPPLARSKKSCIKSSPKAAWGRLISQSSENPHLPICEPVYTVGQCRQCNLWLKDPNVSNVLCKLSHIEHGGFALLEVIGSKGEVKVNGKIYGKKCRLILSGGDEVIFGFSGEQAYIFQQLHNNISTANVPPPVSILEAQGAPIIGTQIEAKPGDLSAVAGASILASFSNFNEDLSLISPPANTCKNTQQKTDASSLPAGNGDDKANVDVKHNTVNNELDGVSYAEETGRLSSTTLNEDPMVDAVEVNVSVDADVGKMTAASSKLRPLFSPDLDLSGKITKILEKNKELKERLRSVDTRNILASPKQQALKDSLQMRILNAENIDVSFESFPYYLSDTTKNVLIASAYIHLKCNDSGKYVSDLPSLSPRILLSGPTGSEIYQETLSMALAKHFDAWLLIVDSLSLPGRAPLKEVEATKESSRPERPVFIKRSSTQAATVQHKKPASCVDAQIIGGSAVSSQFILKQEVSTASSKGSTIKAGDRVKFVGDFTSTVSSPQVFPARGPSYGSKGRVLIAFENNRSSKIGVRFEKSIPDGNDLGGLCENDHGFFCSANHLVLVDGCGGDDSSKVAINEIFEIASNLSKSGPLVLLIKDIEKGVSGNSEVLKSKFGSLPQNVVVIGSHIQPDNRKEKTQPGSLLFTKFGGNQTALLDLAFPDNFTRLHDRSKETPKVMKQLNRLFPNKVTIQLPQDESLLSDWKQQLDRDTETMKAQSNVASIRLVLNKFGLDCSDLETLCIKDQTLTTENVEKIIGWAISYHYMHSSEVSTKESKPVISAESVRYGFNILQGIQNENKSTKTSLKDVVTENEFEKKLLGDVIPPTDIGVSFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINVSMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDSTNRAKIMRVILSKEDLAPDVDLEALANMTDGYSGSDLKNLCVTAAHCPIREILVKEKKDRSFALAENKPLPGLCSSADIRSLKMEDFKYAHEQVCASVSSDSSNMNELLQWNDLYGEGGSRKKTSLSYFM* 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3797 1221 ProSitePatterns AAA-protein family signature. 1060 1079 IPR003960 GO:0005524|GO:0016887
Psa6g3797 1221 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1221 - -
Psa6g3797 1221 MobiDBLite consensus disorder prediction 1 52 - -
Psa6g3797 1221 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1221 - -
Psa6g3797 1221 SUPERFAMILY SMAD/FHA domain 112 203 IPR008984 GO:0005515
Psa6g3797 1221 Gene3D - 915 1194 IPR027417 -
Psa6g3797 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 916 1194 IPR027417 -
Psa6g3797 1221 Coils Coil 370 390 - -
Psa6g3797 1221 Pfam ATPase family associated with various cellular activities (AAA) 957 1086 IPR003959 GO:0005524|GO:0016887
Psa6g3797 1221 MobiDBLite consensus disorder prediction 1 46 - -
Psa6g3797 1221 CDD FHA 114 200 IPR000253 GO:0005515
Psa6g3797 1221 CDD AAA 955 1088 - -
Psa6g3797 1221 Gene3D - 111 219 - -
Psa6g3797 1221 SMART AAA_5 953 1090 IPR003593 -
Psa6g3797 1221 Gene3D - 1089 1183 - -
Psa6g3797 1221 Pfam AAA+ lid domain 1110 1143 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3797 Psa-Chr6 330272579 330286595 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3797 952 1157 Calmodulin-binding Proteins AT3G56690 37.619 1.96e-32 135