Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3796 ATGGTCGAAACCAGACGTGGCTCTTCTTCTTCCAAACGCTCTCTCTCTTCTCCTTCTCCTTCCAACGCCAAACGATCCAAGGTTTCAGAGGATGCTTCATCTAACCCTTTGCCCTCTGTTCCCGTCAAGGAATCTGCAACTGGTAACGAATCTGGTGAACCTGAGATACAACGCTCTGATCTACCGGAAACGGCGTCGTTGAAGGTTCTTGATGGTGATAGCAATAAGCCTCCTTCTGTGCCAATTGAAACTGATCCTTTGGTGTCCCCTCAGTGTCCAGGTGAAACTGGAGAGAAAGCAAAGGCGGTGCAGCCGCTGGTTTCTTTGGTTTCTTGTCGGAAGAAACGTTCCGTGGCGAAACCAATTCATAAGGCTGCTGCGTGGGGGAAGCTCATTTCTCAATGTGCTCAGAATCCTCACTTGTCCATTAGTGATCCAATCTTCACAGTTGGTCAAGGCCGTCAGAGTAATTTGACACTTAAAGATCCTACTATTGGTAATGTTTTGTGCAAGTTGAGCCACATAGAGCAACATGGAGGTTCATCAGTTGCCCTACTGGAAATCACAGGGGGTAAAGGTGTTGTTCAAGTCAACGGCAAGACTTACCGAAGGAATGCCCGGCTGATTTTGAATGGAGGCGATGAGGTGATATTTGGTGCTTCAGGAAAACATGCTTATATCTTTCAACAGCTAAAAAGTAATAATGTTTCTACTGCTGGTATACCTCCTGTGAGTATATTAGAAGCCCATAGTGCTTCAATGAATGGGATGCAAGTTGAAGCTAGATCTGGAGACCCTTCGGATGTTGCAGGAGCATCAATATTGGCCTCTCTATCTAATATTCACAAAGATTTATCTCTTGTTTCACCTCCAGCTAAAACATGCAAGAAACAAAATTCTGATATTTCATCACTACCTTCTGGCCATGGGGATATTGTTCCGGACAATGAAAGGAAAGATGCCACCAATAATGATGAGTCGACTGGAGTTATTTCTTCTAGCAAAGCTGTTCCTGCATCCTCTACCACTGTTAATGAAAATCCTAGCCTTGACACCATGGATGTCGATGCCAATGTGGATACAAATGTTGGGAAGATGCCTGCTAATTACGAATTGAGGCCGTTATTGTGCATGCTTGCCGGTGGCTCAGGAACTGAATTTGATTTAAGTGGCAGCATTCACAAGATATTAGAAGATCGAAAGGAATTAGGAGAACTCCTTAAAGGTGCTGATACAACAACAATATTAGCATCTACCAGGAGACAAGCATTTAAGGACAGCCTAGAACAGAGAATTCTCAATGCTGAGGATATTGATGTCTCTTTTGAGGCATTCCCGTATTATCTAAGTGATACAACAAAGAATGTGTTGATTGCTTCTACATATATTCATTTGAAGTGCAATGGCTTTGGAAAATATGCTTCAGATCTCCCATCGGTGTCCCCACGGATATTGCTATCTGGTCCTTCAGGCTCGGAAATATATCAGGAGACTTTGTCCAAGGCACTTGCTAAGCATTTTGGTGCCAGACTACTGATTGTGGATTCACTTTCGCTGCCCGGTGGAACACCATCGAAGGAAGCTGATTCTGCCAAAGAAATTTCAAAGCCCGAAAGGCCATCTGTTTTGTCTAAGAGAAGTAGCCAGGCTCCTACTTTACATCATAGGAAACCCACTTCTAGTGTTGATGCTGAAATTATCGGTGGATCTACATTAAGTTCGCAGGCTATGCTGAAGCATGAGGTTTCTACTGCATCATCAAAAGGCATTGCTCTTAAAAAAGGTGATCGGGTAAAATTTGTCGGTAACTTCCCACCCACTGTCTCGTCACTGCAAAATTATTCTTCAAGTGGTAGAGGACCAAGCTATGGTTTCCGTGGCAAGGTTGTACTTGCTTTTGAAGACAACGAGTCTTCAAAAATTGGGGTCAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCATATCGAAGATGATCATGGGTTCTTTTGTTCTGCAAACCACTTGCAACGAATAGAGAGTTCAGGAGGGGATGACGACAAAGTTGCAATTAATGAAATCTTTGAGGTTGCCGCTAATCAATGTAAAACTGGTGCACTTGTTTTGTTCATTAAAGATATAGAGAAAGCAATGGTTGGGAACAATGATGTTTTGAAAAGTAAATTTGAAACCCTACCACAAAACATTGTGGTAATTGGCTCAAATACTCAGCTGGACAGTCGTAAGGAGAAGACCCATCCTGGGGGACTTCTGTTTACAAAGTTTGGGAGCAATCAGACAGCTCTACTTGATCTTGCTTTTCCGGATAACTTTAGCAAACTACATGATAGGAGCAAAGAAAGCTCCAAAGTAACAAAGCAACTCAACCGCCTTTTCCCAAACAAAGTGACAATACAGTTGCCTCAGGATGAGGCTTTACTTTCGGATTGGAAGCAGCAGTTAGATCTTGATATTGAAACTATGAAAGCACATTCCAATGTTGTCATGCTTCGTTCGGTTCTCAAAAGAATCGGATGGGATTGTTCTGACCTTGACACTATTTGCATCAAAGATCAAACCCTGACTACAGAAAGTGTGGAGAAGATCATTGGCTGGGCTATAAGTTATCATTTTATGCATTCATTTGAAGCTTCTACCAAAGAAGTAAAGCGTGTGATATCTGCAGAAAGCATTAAGTATGGGTTTGACATTCTTCAAGGCGTCCAAAATGAGAACAAGAGCGTAAAAAAGTCACTAAAGGACGTGGTTACTGATAATGAATTTGAGAAAAAGTTGCTTGGTGATGTTATTCCGCCAACTGAAATTGGAGTCACGTTTGAAGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTAAAAGACCTGAACTGTTTTGTAAAGGACAACTAACTAAGCCTTGCAAGGGAATATTGCTTTTCGGCCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTTGCAACTGAAGCTGGAGCAAATTTCATAAACATTTCAATGTCCAGTATTACTTCCAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTCTCCCTAGCCAGCAAAATTGCTCCAAGTGTTATATTTGTTGATGAGGTTGATAGTATGTTAGGCAGACGTGAAAACCCTGGTGAGCATGAGGCTATGCGGAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTTTGCGTACAAAAGAAAAGGAGCGTATACTTGTACTTGCTGCTACAAATAGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCACGGAGATTGATGGTCGATTTGCCGGATGCTCCGAATAGAGGAAAAATTCTGAGTGTCATTTTAGCAAAAGAAGATTTGGCACCCGATGTTGATTTGGAAGCAATAGCAAATATGACTGACGGATACTCTGGAAGTGACCTAAAGAATCTGTGTGTCACAGCAGCTCACTGCCCAATAAGGGAGATCTTGGAAAAGGAAAAGAAGGAAAGAAGCTTAGCATTGTCAGAGAACAAACCTGAACCTGAATTGTGTAGTAGTGCAGACATTCGTCCCTTAAAGATGGAGGATTTTAGATATGCACATGAGCAGGTGTGTGCAAGTGTGTCTTCGGAGTCGACAAATATGAATGAGCTACAACAATGGAATGATCTTTATGGAGAAGGCGGATCTCGAAAAACAAGATCTTTAAGTTACTTCATGTAA 3738 0.4205 MVETRRGSSSSKRSLSSPSPSNAKRSKVSEDASSNPLPSVPVKESATGNESGEPEIQRSDLPETASLKVLDGDSNKPPSVPIETDPLVSPQCPGETGEKAKAVQPLVSLVSCRKKRSVAKPIHKAAAWGKLISQCAQNPHLSISDPIFTVGQGRQSNLTLKDPTIGNVLCKLSHIEQHGGSSVALLEITGGKGVVQVNGKTYRRNARLILNGGDEVIFGASGKHAYIFQQLKSNNVSTAGIPPVSILEAHSASMNGMQVEARSGDPSDVAGASILASLSNIHKDLSLVSPPAKTCKKQNSDISSLPSGHGDIVPDNERKDATNNDESTGVISSSKAVPASSTTVNENPSLDTMDVDANVDTNVGKMPANYELRPLLCMLAGGSGTEFDLSGSIHKILEDRKELGELLKGADTTTILASTRRQAFKDSLEQRILNAEDIDVSFEAFPYYLSDTTKNVLIASTYIHLKCNGFGKYASDLPSVSPRILLSGPSGSEIYQETLSKALAKHFGARLLIVDSLSLPGGTPSKEADSAKEISKPERPSVLSKRSSQAPTLHHRKPTSSVDAEIIGGSTLSSQAMLKHEVSTASSKGIALKKGDRVKFVGNFPPTVSSLQNYSSSGRGPSYGFRGKVVLAFEDNESSKIGVRFDKSIPDGNDLGGHIEDDHGFFCSANHLQRIESSGGDDDKVAINEIFEVAANQCKTGALVLFIKDIEKAMVGNNDVLKSKFETLPQNIVVIGSNTQLDSRKEKTHPGGLLFTKFGSNQTALLDLAFPDNFSKLHDRSKESSKVTKQLNRLFPNKVTIQLPQDEALLSDWKQQLDLDIETMKAHSNVVMLRSVLKRIGWDCSDLDTICIKDQTLTTESVEKIIGWAISYHFMHSFEASTKEVKRVISAESIKYGFDILQGVQNENKSVKKSLKDVVTDNEFEKKLLGDVIPPTEIGVTFEDIGALENVKDTLKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKEKERILVLAATNRPFDLDEAVIRRLPRRLMVDLPDAPNRGKILSVILAKEDLAPDVDLEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLALSENKPEPELCSSADIRPLKMEDFRYAHEQVCASVSSESTNMNELQQWNDLYGEGGSRKTRSLSYFM* 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3796 1245 MobiDBLite consensus disorder prediction 1 99 - -
Psa6g3796 1245 MobiDBLite consensus disorder prediction 292 344 - -
Psa6g3796 1245 CDD AAA 946 1112 - -
Psa6g3796 1245 ProSitePatterns AAA-protein family signature. 1084 1103 IPR003960 GO:0005524|GO:0016887
Psa6g3796 1245 Gene3D - 1113 1207 - -
Psa6g3796 1245 MobiDBLite consensus disorder prediction 292 306 - -
Psa6g3796 1245 Gene3D - 939 1219 IPR027417 -
Psa6g3796 1245 SUPERFAMILY SMAD/FHA domain 128 222 IPR008984 GO:0005515
Psa6g3796 1245 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1245 - -
Psa6g3796 1245 MobiDBLite consensus disorder prediction 325 344 - -
Psa6g3796 1245 MobiDBLite consensus disorder prediction 1 54 - -
Psa6g3796 1245 MobiDBLite consensus disorder prediction 523 561 - -
Psa6g3796 1245 Gene3D - 127 239 - -
Psa6g3796 1245 Pfam ATPase family associated with various cellular activities (AAA) 981 1110 IPR003959 GO:0005524|GO:0016887
Psa6g3796 1245 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1245 - -
Psa6g3796 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 940 1216 IPR027417 -
Psa6g3796 1245 Pfam AAA+ lid domain 1134 1170 IPR041569 -
Psa6g3796 1245 MobiDBLite consensus disorder prediction 541 556 - -
Psa6g3796 1245 SMART AAA_5 977 1114 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3796 Psa-Chr6 330213248 330224533 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3796 976 1181 Calmodulin-binding Proteins AT3G56690 35.714 6.35e-31 130