Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3793 ATGGATGTAATTTTTGAAGTGCAAAGAGGAAGATCATTCTCCATTGAAGTAGGTTTTTTCGACACTATTTTGGAAATTAAAGAAAAAATCCAAAAGTATCACAGAATTCCAATCTCCAGACAAAATCTAATTTTTAATGGCCAAATTCTTCAAGACGACGGTGATATTTGGAAGTGCGCGATTTTTCAAAACTCACGTATTCATCTTATGGTGACCACCACCGCAGATTCTGATCATCGGAAATTACAAATAGATCAGGATACCAAATTTCACCTCAACGTTAAAACTCCTTCGTCCAAATCTCACTTTCATGTTGAAATTGACAAACACGATACCGTTTTAAAGCTCAAACAAAAAATTCACGACATTGATCAAAATGATGTCCCAGTTATCAATATCATGTTGCATTCAAGTGGAACTGAATTGCATGATAATCAGTTCTTACGTGATTGCTATCTTTCGGAGAAGAGCGAAGTTGAAGTGAGTTTTAAGCCACACATACCGGCAGCACCTGCTATTGTTGGTGGTGGAGGTGGAGCATCAAAGAAGTTGAAGGTAATGGTTTTGCCTAAAAGTGGTATAAAGAAAGTAGCTGTTGAAATGAATGCTTCTGATAACGTTGGAGAATTGAAAAAAGAGCTTCATAAATTGTGTCAAAGACTTCAATTTCATCTTCCACCAGAAGGTTACTTTTTCATTTATAAACAAAATGTTATGGAGGATGATAAGTCTTTTCGATGGCACAATGTTTCTCAAGGTGATACCATTGAAATCTTTAATGGTAGTGTTAC 791 0.3578 MDVIFEVQRGRSFSIEVGFFDTILEIKEKIQKYHRIPISRQNLIFNGQILQDDGDIWKCAIFQNSRIHLMVTTTADSDHRKLQIDQDTKFHLNVKTPSSKSHFHVEIDKHDTVLKLKQKIHDIDQNDVPVINIMLHSSGTELHDNQFLRDCYLSEKSEVEVSFKPHIPAAPAIVGGGGGASKKLKVMVLPKSGIKKVAVEMNASDNVGELKKELHKLCQRLQFHLPPEGYFFIYKQNVMEDDKSFRWHNVSQGDTIEIFNGSV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3793 263 CDD Ubl_ubiquitin_like 3 70 - -
Psa6g3793 263 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Psa6g3793 263 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED 1 263 - -
Psa6g3793 263 Gene3D - 183 259 - -
Psa6g3793 263 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 263 - -
Psa6g3793 263 CDD Ubl_ubiquitin_like 92 161 - -
Psa6g3793 263 Pfam Ubiquitin family 195 257 IPR000626 GO:0005515
Psa6g3793 263 Pfam Ubiquitin family 92 164 IPR000626 GO:0005515
Psa6g3793 263 Pfam Ubiquitin family 6 73 IPR000626 GO:0005515
Psa6g3793 263 SUPERFAMILY Ubiquitin-like 178 259 IPR029071 -
Psa6g3793 263 SMART ubq_7 1 72 IPR000626 GO:0005515
Psa6g3793 263 SMART ubq_7 90 164 IPR000626 GO:0005515
Psa6g3793 263 SMART ubq_7 184 261 IPR000626 GO:0005515
Psa6g3793 263 ProSiteProfiles Ubiquitin domain profile. 90 164 IPR000626 GO:0005515
Psa6g3793 263 ProSiteProfiles Ubiquitin domain profile. 184 258 IPR000626 GO:0005515
Psa6g3793 263 Gene3D - 89 164 - -
Psa6g3793 263 Gene3D - 1 70 - -
Psa6g3793 263 SUPERFAMILY Ubiquitin-like 87 158 IPR029071 -
Psa6g3793 263 SUPERFAMILY Ubiquitin-like 1 78 IPR029071 -
Psa6g3793 263 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3793 Psa-Chr6 330077515 330078406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3793 1 71 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 33.803 7.82e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3793 - - lang:109360845 333.183