Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3779 ATGTCTTCTTTATATTCAACTTGGGTTACATCTCTGTCATGTTCACCTTCTTCAGGTGATGGTGCTGTAGTATATGCATTACCTCAATGGCTGAGATTTGTTTTTCTGTCACCGTGTCCTCAGAGAGCTCTTCTCTCAGCCGTTGATTTTTTGCTATTGTTTACTCTATTAGTCTTTGCCATCATAAAGCTTTATTCTAGGTTTACTTCCAATGGAAGTACCAACACAGAAGAAATCAACAAGCCTCTTATCAGTAACACAAGAGGTTTGAGAACGAGAACAAGAACAACTCTATGGTTCAACCTAACTCTAATTGCAACGATTGTTTTGACTGTGTTGTACACTGTTGCTTGCATTTTAGTGTTTAGCAGTTCCGGTGTTGAGTCCTCATGGAAACAACTTGATGGACTATTTTGGGTTGTTCAAGTAGTAACTCAATTAGTCCTTGTGATCTTGATCATCCATGTCAAAAGATTTGAAGCTGCTGTTCACCCTTTATCGCTTCGAGTTTTTTGGGTTGCAAATTTCGTTGTTGTTTCTTTGTTCGCTGCTTCTGGTGTTACGCGATTGGTTTCTTTGGAGGGGAGTGAGTCCTTTGGATTTATGGTAGATGATGTTGTGTCTTTCATTTCTCTACCTGTTTCGCTTTTTCTGCTTATTGTTGGTGTTAAAGGTTCCACTGGTGTTGTTAATTCAAGAGAAGAAACTCAAAGTGTTGTTGATAATGATGAAGAAACAAAACTATATGATCATGGTTTGGATAAACCAAGTCTTACTACTGGTTTTGCTTCGGCTTCTCAATTTTCGAAAACCTTTTGGATTTGGTTAAACCCTTTGTTGAGTAAAGGGTATGCTTCGCCGCTTAATATCGATGAAGTTCCGTATCTTTCTCCACAGCATAGAGCTGAGAGGATGTCTGTTATCTTTGAGTCAAAATGGCCGAAATCGGAAGAGAGGTCGAAGTATCCGGTTAGAACCACGTTGCTTCGGTGTTTCTGGAAAGACATAATCTTCACTGCCTTTCTTGCTGTTATTAGGCTATCTGTTATGTTTGTTGGACCGGTTTTAATTCAAGATTTTGTTGATTTCACTGCTGGAAAAGGTAGTTCCGTGTATGAAGGTTACTATCTAGTGCTGATTCTTCTTGTAGCCAAGTTTATTGAAGTTTTAACAACTCATCATTTCAACTTCAACTCTCAGAAACTTGGAATGCTTATAAGATGCACTCTCATTACTTCTTTATATAAAAAGGGGTTGAGGCTATCTTGTTCTGCAAGACAAGATCACGGTGTTGGTCCCATTGTGAATTACATGGCTGTTGATACACAGCAGCTATCTGATATGATGCTTCAGTTACATGCGGTTTGGATGATGCCGTTTCAAGTTGGTATTGGTTTGTTTTTGCTTTACAATTGTCTCGGTGTTTCGGTGATCACCGCGTTTCTTTGCCTTCTTCTTGTTCTCGTGTTTATCGTGGTGACAACTCGACAGAACAAAAACTACCAGTTTAAAGCTATGATAAGCCGCGATTCGAGAATGAAAGCTGTGAATGAGATGCTTAATTACATGCGTGTTATCAAGTTTCAGGCATGGGAAGAGCATTTCAACAGTAGAATCTTGAGTTTCCGTCAGTCGGAATTCGGGTGGCTTTCGAAGTTTATGTACTCGATTTGTGGCAATATCATTGTGTTGTGGAGCTCTCCTATGTTGATATCGACTCTCACTTTCGGTACCGCGCTTTTGCTTGGAGTTAAACTTGATGCAGGAACTGTTTTCACTACAACAACTGTGTTTAAGATCCTGCAGGAACCTATTAGGACTTTTCCTCAGTCAATGATATCTCTCTCACAAGCATTGGTATCACTTGGGAGGTTGGATAGGTACATGTCTAGCAGAGAACTGAATGATGATTCGGTTGAGAGAAATGTCGGCTGCGATGGAGAAACTGCCGTCGATGTTCAAGATGGTACCTTCAGTTGGGATGATGATGGCTTAGAACAGGACCTGAAAAATATTCATTTGAAGGTTAATAAAGGCGAACTCACAGCTATTGTCGGTACGGTAGGATCTGGAAAGTCTTCCCTGCTTGCATCAATTCTTGGCGAAATGCACAGAATTTCTGGAAAGGTTCAAGTTTGTGGGAGTACTGCTTATGTTGCGCAAACGTCTTGGATTCAAAACGGGACAATTGAAGAGAATATTCTCTTTGGTTTACCATTGAATAGACAGAAGTACAATGATGTTATCAGGGTTTGTTGTTTGGAGAAAGATTTAGAAATGATGGAATATGGAGATCAGACTGAGATTGGAGAGCGCGGCATCAACCTCAGCGGTGGTCAGAAGCAGCGTATACAGCTTGCAAGGGCTGTATACCAAGACTGTGACATATATCTTCTTGATGATGTCTTCAGCGCAGTTGATGCACATACCGGCACTGAAATATTTAAGGAATGTGTGAGGGGAGCTCTGAAAGGAAAGACCATAGTTCTTGTAACACACCAAGTAGACTTCTTACATAATGTGGATTGTATCGTGGTGATGAGGGAAGGAACAATAGTCCAATCAGGTCGGTACAATAACCTACTTGATTCTGGATTGGATTTCGGTATCCTGGTAGCAGCACACGAGACTTCTATGGAACTTGTAGAACAAGGCGCGGCCATGCCTGGTGAAAATTCGAATAAACCGATGATATCTAAGTCAGCGTCTATTAACAACAGAGAAACCAATGGTGAAAGTAATTCTCTTGACCAACCTAAATCTGCTAAGGGAAGTTCTAAACTTGTCAAAGAAGAAGAAAGAGAAACCGGTAAAGTTAGCTTTAATATCTATAAACTCTACTGCACGGAGGCTTTTGGATGGGTGGGGATTTTCGCGGTATTCTTTCTTTCTTTGTTGTGGCAAGCATCTATGATGGCTAGTGATTATTGGTTGGCATATGAAACATCGGTTAAGCGTGCTGAATTTTTCAATCCGTCTTTGTTTATTTCCGTCTATGCAATTATCAGCTTAGTTTCAGTTCTTCTGATAGTTCTGAGATCCTACTCGGTTACAGTCTTTGGATTAAAGACAGCACAGACTTTCTTCAATCAAATTCTTAATAGCATCTTGCATGCTCCAATGTCTTTCTACGACACTACTCCATCAGGCCGAATTCTAAGCAGGGCATCCACTGATCAGACGAATGTCGATATCTTCATCCCTTTGTTCATCAATTTTGTGGTCGCCATGTATATTACGGTCGTCAGCATCATCATAGTCACATGCCAAAATTCATGGCCGACAGCTTTCTTGCTGATTCCTCTTGTTTGGTTGAACCTTTGGTACCGGGGTTATTTTCTTTCTACTTCTCGCGAGTTAACTAGGCTGGATTCAATTACAAAAGCACCTGTGATTGTTCATTTCTCCGAAAGCATATCCGGGGTAATGACGGTCCGCGCATTCCGAAAACAGAAGGAGTTTAGTTTAGAAAACATCAGACGAGTAAATTCTAACTTGCGAATGGATTTCCACAACTTCAGTGCCAATGCGTGGTTGGGTTTCCGCTTAGAATTGCTTGGAAGCTTGATTTTCTGCATGTCTGCTTTGTTCATGATTATATTACCTAGCAGTATAATAAAGCCAGAAAACGTTGGTTTATCTCTCTCCTATGGATTGTCGTTGAATTCGGTGATGTTCTGGGCCATATACATGAGTTGTTTCATTGAAAACAAAATGGTGTCTGTTGAGAGGTTAAAACAGTTCTCAAATATTCCATCAGAAGCAGCGTGGAACATTAAGGATCGCTCGCCTCCTCCAAATTGGCCCGGTCAAGGCCATGTTGATATCAAAGACTTGCAGGTCAGATATCGTCCGAACACTCCTTTGGTTCTTAAAGGCATTACTTTAAGCATTAATGGAGGAGAAAAGGTTGGCGTTGTTGGTCGAACGGGGAGTGGAAAATCAACTTTAATTCAAGTTTTCTTCAGGCTGGTGGAACCCAGCGGAGGCAAAATAATCATCGATGGCATTGACATATCCGCCTTAGGACTTCATGATCTCAGATCTCGATTTGGTATCATCCCTCAGGAGCCTGTCCTTTTCGAAGGTACCGTTAGAAGTAACATTGATCCAACTGGACAGTATACAGATGATGAGATATGGAAGAGTTTGGAGCGCTGTCAACTGAAAGACTCGGTAGCTTCAAAGCCTGAGAAACTCGACTCATTAGTGGTTGACAACGGAGATAACTGGAGTGTGGGGCAGAGGCAGTTGCTTTGTTTAGGAAGAGTCATGCTTAAGCAAAGCAGGCTGTTATTCATGGACGAGGCTACAGCTTCTGTCGATTCTCAAACCGACGCTGTAATTCAGAAGATCATCAGAGAGGACTTTGCAGCGCGTACCATCATCAGCATTGCTCATAGAATACCAACAGTGATGGACTGTGATCGAGTGTTAGTTGTAGATGCAGGGCGTGTGAAAGAATTCGACACACCTACGAACTTGCTCCAGAGGCAATCGTTGTTTGCAGCATTGGTTCAAGAGTATGCCAACCGCTCTACTGGACTATAA 4551 0.4144 MSSLYSTWVTSLSCSPSSGDGAVVYALPQWLRFVFLSPCPQRALLSAVDFLLLFTLLVFAIIKLYSRFTSNGSTNTEEINKPLISNTRGLRTRTRTTLWFNLTLIATIVLTVLYTVACILVFSSSGVESSWKQLDGLFWVVQVVTQLVLVILIIHVKRFEAAVHPLSLRVFWVANFVVVSLFAASGVTRLVSLEGSESFGFMVDDVVSFISLPVSLFLLIVGVKGSTGVVNSREETQSVVDNDEETKLYDHGLDKPSLTTGFASASQFSKTFWIWLNPLLSKGYASPLNIDEVPYLSPQHRAERMSVIFESKWPKSEERSKYPVRTTLLRCFWKDIIFTAFLAVIRLSVMFVGPVLIQDFVDFTAGKGSSVYEGYYLVLILLVAKFIEVLTTHHFNFNSQKLGMLIRCTLITSLYKKGLRLSCSARQDHGVGPIVNYMAVDTQQLSDMMLQLHAVWMMPFQVGIGLFLLYNCLGVSVITAFLCLLLVLVFIVVTTRQNKNYQFKAMISRDSRMKAVNEMLNYMRVIKFQAWEEHFNSRILSFRQSEFGWLSKFMYSICGNIIVLWSSPMLISTLTFGTALLLGVKLDAGTVFTTTTVFKILQEPIRTFPQSMISLSQALVSLGRLDRYMSSRELNDDSVERNVGCDGETAVDVQDGTFSWDDDGLEQDLKNIHLKVNKGELTAIVGTVGSGKSSLLASILGEMHRISGKVQVCGSTAYVAQTSWIQNGTIEENILFGLPLNRQKYNDVIRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGTEIFKECVRGALKGKTIVLVTHQVDFLHNVDCIVVMREGTIVQSGRYNNLLDSGLDFGILVAAHETSMELVEQGAAMPGENSNKPMISKSASINNRETNGESNSLDQPKSAKGSSKLVKEEERETGKVSFNIYKLYCTEAFGWVGIFAVFFLSLLWQASMMASDYWLAYETSVKRAEFFNPSLFISVYAIISLVSVLLIVLRSYSVTVFGLKTAQTFFNQILNSILHAPMSFYDTTPSGRILSRASTDQTNVDIFIPLFINFVVAMYITVVSIIIVTCQNSWPTAFLLIPLVWLNLWYRGYFLSTSRELTRLDSITKAPVIVHFSESISGVMTVRAFRKQKEFSLENIRRVNSNLRMDFHNFSANAWLGFRLELLGSLIFCMSALFMIILPSSIIKPENVGLSLSYGLSLNSVMFWAIYMSCFIENKMVSVERLKQFSNIPSEAAWNIKDRSPPPNWPGQGHVDIKDLQVRYRPNTPLVLKGITLSINGGEKVGVVGRTGSGKSTLIQVFFRLVEPSGGKIIIDGIDISALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDDEIWKSLERCQLKDSVASKPEKLDSLVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRVLVVDAGRVKEFDTPTNLLQRQSLFAALVQEYANRSTGL* 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3779 1516 Pfam ABC transporter transmembrane region 958 1210 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g3779 1516 Pfam ABC transporter transmembrane region 337 604 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g3779 1516 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 337 617 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g3779 1516 CDD ABC_6TM_ABCC_D2 957 1249 IPR044726 GO:0140359
Psa6g3779 1516 MobiDBLite consensus disorder prediction 908 929 - -
Psa6g3779 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1264 1507 IPR027417 -
Psa6g3779 1516 ProSitePatterns ABC transporters family signature. 776 790 IPR017871 GO:0005524
Psa6g3779 1516 CDD ABCC_MRP_domain1 651 851 - -
Psa6g3779 1516 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 91 1515 - -
Psa6g3779 1516 MobiDBLite consensus disorder prediction 908 922 - -
Psa6g3779 1516 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 958 1237 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g3779 1516 Gene3D - 630 890 IPR027417 -
Psa6g3779 1516 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 91 1515 - -
Psa6g3779 1516 SUPERFAMILY ABC transporter transmembrane region 328 630 IPR036640 GO:0005524|GO:0016021
Psa6g3779 1516 Gene3D - 1257 1508 IPR027417 -
Psa6g3779 1516 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1274 1508 IPR003439 GO:0005524
Psa6g3779 1516 Gene3D ABC transporter type 1, transmembrane domain 311 629 IPR036640 GO:0005524|GO:0016021
Psa6g3779 1516 Gene3D ABC transporter type 1, transmembrane domain 920 1255 IPR036640 GO:0005524|GO:0016021
Psa6g3779 1516 SMART AAA_5 1300 1484 IPR003593 -
Psa6g3779 1516 SMART AAA_5 678 851 IPR003593 -
Psa6g3779 1516 Pfam ABC transporter 669 802 IPR003439 GO:0005524
Psa6g3779 1516 Pfam ABC transporter 1291 1439 IPR003439 GO:0005524
Psa6g3779 1516 SUPERFAMILY ABC transporter transmembrane region 954 1254 IPR036640 GO:0005524|GO:0016021
Psa6g3779 1516 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 651 874 IPR003439 GO:0005524
Psa6g3779 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 649 865 IPR027417 -
Psa6g3779 1516 CDD ABCC_MRP_domain2 1272 1492 - -
Psa6g3779 1516 CDD ABC_6TM_ABCC_D1 338 625 IPR044746 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3779 Psa-Chr6 329122051 329128541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3779 651 867 Calmodulin-binding Proteins AT2G36910 30.472 3.75e-23 105