Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3760 ATGTGTGGCGGTGCTATCATCGCTGACTTCATTCCTCGCCGTGGAGGCCGCCGCCTTACCGCCTCGGAGCTCTGGCCTAACTCTCTCGGGCAACAGATTGACTCCTCGGACTTCGGTTTTTCTGGTATTGATCAACAGCCTCCCAGTACTCTCAAAAGATCAGACCCTCCTAAAGTTAATGAACGAGTTGAAAAGCCTGTGAAAAAACAGAGGAAAAATCTCTACAGAGGAATCCGGCAGCGTCCTTGGGGAAAATGGGCTGCGGAGATTCGTGATCCTAGGAAAGGTGTTCGTGTTTGGCTTGGTACTTTCAACACTGCTGAAGAAGCTGCTAGAGCTTATGACAAAGAAGCTCGAAAAATACGCGGCAAAAAAGCTAAGGTTAATTTCCCCAACGAAGATGATGAATATTCTATTCAAACTCGTCGTCATGTTAATAATCCTAATCCACCACCTATTCGACCACCGAACCCGAACCTGAATCGGAATCATTCTCTCTATCATCATCAACAGCAATATCCAAAAAATCTGAACCTGGAGTTTGGTTATGATCTGAACCAAACTGAACCGTTTATAATATCTGGTTCTGGTGGTTCTGGTGGTGATGAGAATTCTGTATATGGGTCTGGTTCGTGTTCTGAGGTTGGTTACTCTGTACTGGAGTTCAATGGCTCCACTCAGAATGAAAACGGTTATTTCTGTGGTGTTGTGAATGAACATGAGAAAGAGAAAGAGAAAGTGAAAGTGAAAGTATCAAAAGAACAAGAACCACGTGCTGTTGTTATTGTTAGTATTGATCAAGCTGAAGCTGAAGCGGCAAAGAATGAAGTTCAAGAGTTGTCTGATGAATTGATGGCGTACGAGGATTACATGAAGTTTTATCAGATTCCGTACTATGATGGACAATCGATGCCACCGAATATTGTTCAGGAACATGTTGTTGGGGATTTATGGAGCTTTGATTGA 966 0.4348 MCGGAIIADFIPRRGGRRLTASELWPNSLGQQIDSSDFGFSGIDQQPPSTLKRSDPPKVNERVEKPVKKQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEDDEYSIQTRRHVNNPNPPPIRPPNPNLNRNHSLYHHQQQYPKNLNLEFGYDLNQTEPFIISGSGGSGGDENSVYGSGSCSEVGYSVLEFNGSTQNENGYFCGVVNEHEKEKEKVKVKVSKEQEPRAVVIVSIDQAEAEAAKNEVQELSDELMAYEDYMKFYQIPYYDGQSMPPNIVQEHVVGDLWSFD* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3760 321 MobiDBLite consensus disorder prediction 36 62 - -
Psa6g3760 321 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Psa6g3760 321 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Psa6g3760 321 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Psa6g3760 321 Coils Coil 263 290 - -
Psa6g3760 321 Pfam AP2 domain 75 123 IPR001471 GO:0003700|GO:0006355
Psa6g3760 321 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Psa6g3760 321 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Psa6g3760 321 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Psa6g3760 321 MobiDBLite consensus disorder prediction 36 53 - -
Psa6g3760 321 PANTHER DNA-BINDING DOMAIN 54 298 IPR044808 GO:0003700|GO:0009873
Psa6g3760 321 CDD AP2 75 132 IPR001471 GO:0003700|GO:0006355
Psa6g3760 321 PANTHER EREBP TRANSCRIPTION FACTOR 54 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3760 Psa-Chr6 326886050 326887724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3760 1 132 AP2-EREBP Transcription Factor Family AT3G16770 55.319 9.66e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g3760 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3760 K09286 - gmx:100819416 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3760 6 326886050 326887724 Psa6g3760 6 326886050 326887724 ECH