Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3747 ATGGGGATATTGAATTCTCTTGTCAAAGCCTGGCATTGTGCTGCTGCTGAGTTGCCTGGCCGATTGATCATTAATCCTGACAACGAACCTTTCTTGCTATCATTTTTTCCACAGATACACAAACGTTTGATTGACCTTATCAGATTACCGGCAATTGATGCTCAGGCAGCTGCTATAGGTGCACTCGTCAACCTGCAATCCATATTACTCAAAGTAATTAACACAACACATCCTGTTCCAGAAGTTTGCCGGAAAGCTGCCATGATATTAAAGAGTTTTGTTTCTGAGCCACAAAACAGAATTTTGTTGCTAGCCTATGAGAATGCTTTTTCTGAGATACTTTTCACAGATAGCAAACATTCTGACACGTTTGCGAGGATATTAATATTATCACAACCGCTCGCAGACATAGGTGGGAAGGGATTGTTCACAAAAGAGATAGATGAAGCACTCATAAATGAGGACATTGCCATTGCTGTTCATTCAATGAAAGATGTTCCTACATACTCACCAGAGAAAACTATTTTACCGTATCCTTCACAAATGCCATCTCTAGCTGATCTTGAAACAAACTCAGGTGGTTCTAGCTTTGACGTGGTCATAGTCAATCGAACAATTAATCCTGCCCTGGACGAGCTGGTGCAAATTGCACATTGTATAGCATTGGACTATCCTGTCATTGAGATCAGTATTTTGGTGCAAAGGCTTGCCGAACTTGTTACGAGCCATAGGGGCGACCCTGTAAAGGATGTTAATGTTATATTAGCAAAATGGGCAGAAAGAATTACAAAATTAAGAACATCTCTTCACACAAGTGTACTACCTCTTGGGTCCTTAGATGTTGGGCTCTCTAGGCATCACGCCTTACTTTTCAAGATATTAGCAGACAACATTAAGATGCCTTGTAGACTTGTTGAAGGCAGTCATTGCACTGGTGTTGGTCCTTCTAAAATTCCTAATAAAGGAAGTCCAATCAACGGGAAAATTTGCCGCCTTCATATGGTAATTCTTTGTACAAAGACTGGAGTCCTCTTGTACCAAGAAGGCTTATATCTGGGGATTGCAACAATAGTATTTACCTTTGGGAGCCTACATCTGCTGCAACATGGAATATTGACACAACTCTTTTTACTGGACATACCGGTAGTGTTGAAGATCTGCAATAGGAGCCCTACAGAACCTAATGTTTCTGCTTCTTGTTCTGTTGACAAAACCATTGCAATATGGGATACTCGTGGGAGGTCACCAGCTGCGTCTTTTAGATCACATAATGCTGATGTGAATGTTTTGTCATGGAAAGGTTGGCTAGTTGTATGTTGGCGTCGTGCAGTGATGATGGAATTATATCTGTTCGTGATCTCAGATTGCTTAAGGAAGGAGATTCTGTGTAGCCCATGTAAATTCTAA 1407 0.4101 MGILNSLVKAWHCAAAELPGRLIINPDNEPFLLSFFPQIHKRLIDLIRLPAIDAQAAAIGALVNLQSILLKVINTTHPVPEVCRKAAMILKSFVSEPQNRILLLAYENAFSEILFTDSKHSDTFARILILSQPLADIGGKGLFTKEIDEALINEDIAIAVHSMKDVPTYSPEKTILPYPSQMPSLADLETNSGGSSFDVVIVNRTINPALDELVQIAHCIALDYPVIEISILVQRLAELVTSHRGDPVKDVNVILAKWAERITKLRTSLHTSVLPLGSLDVGLSRHHALLFKILADNIKMPCRLVEGSHCTGVGPSKIPNKGSPINGKICRLHMVILCTKTGVLLYQEGLYLGIATIVFTFGSLHLLQHGILTQLFLLDIPVVLKICNRSPTEPNVSASCSVDKTIAIWDTRGRSPAASFRSHNADVNVLSWKGWLVVCWRRAVMMELYLFVISDCLRKEILCSPCKF* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3747 468 Pfam Porphobilinogen deaminase, dipyromethane cofactor binding domain 130 176 IPR022417 GO:0004418|GO:0033014
Psa6g3747 468 SUPERFAMILY WD40 repeat-like 396 438 IPR036322 GO:0005515
Psa6g3747 468 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 180 345 - -
Psa6g3747 468 Gene3D - 116 191 - -
Psa6g3747 468 Gene3D - 382 440 IPR015943 GO:0005515
Psa6g3747 468 PRINTS Porphobilinogen deaminase signature 126 146 IPR000860 GO:0004418|GO:0033014
Psa6g3747 468 PRINTS Porphobilinogen deaminase signature 157 176 IPR000860 GO:0004418|GO:0033014
Psa6g3747 468 PANTHER SERINE-THREONINE PROTEIN KINASE 180 345 - -
Psa6g3747 468 Pfam Ethylene-responsive protein kinase Le-CTR1 180 312 - -
Psa6g3747 468 SUPERFAMILY Periplasmic binding protein-like II 129 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3747 Psa-Chr6 325643876 325645760 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3747 181 345 MAP Kinase Kinase Kinase AT1G08720 45.833 2.34e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3747 - - aprc:113870732 207.223