Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3744 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTTGGGTTGAAAAGAGGAAGATGGACTAGTGAAGAAGATGAGATCTTGTCCAAATATATTCAGGCCAATGGAGAAGGGTCTTGGAGGTCATTGCCCAAAAATGCAGGATTATTAAGATGTGGAAAGAGTTGCAGACTAAGATGGATTAACTATTTGAGAACTGATCTTAAAAGAGGAAACATTTCTGCTGAAGAAGAGGATACTATAGTAAAACTGCACACTACTTATGGCAACAGGTGGTCCATGATTGCCAGCCACTTGCCTGGAAGAACCGACAACGAAATTAAAAACTATTGGAATTCTCATTTGAGCAGAAAAATGTACTGTTTCTCCAAAATATCCACAACTACTGAGACAAAGACGATTGATCTTCCTCCTCCAAAACGCAAATGTGGTAGAACAAGTCGTTGGGCCATGAAGAAAAACAAGTTCTACAAAAAACAAACCATCACTAATAGTAGTACTATTAGTCAACCTGATATTAAGGAAAAATTAGTTCATGACGTGGAAGTTAAAACAACACATGAACAAGAGAAAGAAAAAACAACATCAACGTATGAGTTATGTGACGACATCTTAGGACTGAGTGAATTATTAGACGACATTAATGAAGTCAGTGGGGCGTTGTGTATGGAAAATTGCTTGCTGGATACATGTGGGTCTGCTACAAATTTAAGTGAAGAGAGAGAAACAATGGAGGAAAATGGAAGAGCAATGAATGATGATGGTGATGTGTGTATTAATTATAAACAGGCTTCATGTGAGGAACCTGAGAGTAGTGTGAATTACCAAGGTTCCAATAATGGGGAAAGTGGTGAATGGAATTGGGAGAGTGTGATGAAGTTTAATATTGAGGAGGAGGAGGATAGTTGCAGGGAGCATAAAGAGAATCTTTTGAATTGGTTGTGTGAAGATGATGATTGGGAAGGTGATAGTAAGATGTTGGGAGAGATAGATTCTCAGAAACAAAATGATTTGATTGCTTGGTTTCTTTCTTAA 1026 0.3801 MGRAPCCEKVGLKRGRWTSEEDEILSKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRTDLKRGNISAEEEDTIVKLHTTYGNRWSMIASHLPGRTDNEIKNYWNSHLSRKMYCFSKISTTTETKTIDLPPPKRKCGRTSRWAMKKNKFYKKQTITNSSTISQPDIKEKLVHDVEVKTTHEQEKEKTTSTYELCDDILGLSELLDDINEVSGALCMENCLLDTCGSATNLSEERETMEENGRAMNDDGDVCINYKQASCEEPESSVNYQGSNNGESGEWNWESVMKFNIEEEEDSCREHKENLLNWLCEDDDWEGDSKMLGEIDSQKQNDLIAWFLS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3744 341 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 320 - -
Psa6g3744 341 Gene3D - 14 66 - -
Psa6g3744 341 CDD SANT 16 61 IPR001005 -
Psa6g3744 341 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa6g3744 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa6g3744 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa6g3744 341 CDD SANT 71 112 IPR001005 -
Psa6g3744 341 Gene3D - 71 116 - -
Psa6g3744 341 Coils Coil 293 313 - -
Psa6g3744 341 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa6g3744 341 PANTHER MYB TRANSCRIPTION FACTOR 2 320 - -
Psa6g3744 341 SMART sant 66 114 IPR001005 -
Psa6g3744 341 SMART sant 13 63 IPR001005 -
Psa6g3744 341 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa6g3744 341 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa6g3744 341 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3744 Psa-Chr6 325503939 325508095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3744 1 168 MYB Transcription Factor Family AT5G49330 64.324 5.68e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa6g3744 Myb_DNA-binding 3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3744 K09422 - gmx:100793350 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3744 6 325503939 325508095 Psa6g3744 6 325503939 325508095 ECH