Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3723 ATGCTTGAAACCAATCACTCACCGCGAGTCTTTCGCGGTGTTCGTTTCACCCTCTTTGGTTTCGACCCTCTCACAGAAAGCAAGATACGATTCAAACTTGTGAATGGCGGTGGAATTGATGCGGGGAAGAACACTGGGAATTGTACTCATGTTATTGTTCATAACCTTGTCTATGACGATCCCGTGTGTGTTGCTGCAAGAGATGATGGAAAGACGCTGGTTACGGCATTGTGGGTTGAACACAGTGCTGATATTGGAATGGCCGTTGATGTTACATCGGTTATGTACAAACCGCTTAAAGACTTGAATGGAATTCCTGGTGCAAAAGATCTGTTTGTTTGCTTGACTGGTTATATACACCAGGATCGGGAAGACATTATGACTATGGTTGGCTTGATGGGTGCAGGGTTTTCTAAGCCGTTGGTGGCAAACAAGGTTACTCATCTTGTATGCTACAAATTTGAAGGGGAAAAGTACGTACTTGCAAAGAGAATGGGCACAATAAAGCTAGTTAATCATCGTTGGCTGGAAGATTGCTTGAAGGATTGGGTGCTTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAATTGGAGATAATGGTGGAAGAGGCTAAAGATTCTGAGGACGAGGCTGAAGATTCCAAGCTGGGGCAATTAGGGGGAAGGAATATAAGCAAAAGCCCCCCTGGTTCAAAATTTGGTACAGCTGTGACTCATGGATTGTCCAAAACTTTACGAGAGGAGGCATCAAATGCCATCCCAGATTCTACTGGTCCACAGGTCTTGCCAAACGTCAATAACGTTGAAGATCCTTCAACTATTACAAGAAATAAGAACAATTCTGATCAAGATGCAGACTTGAATAATGTTAGTGACTTGAAGGCACATGGCTTCCAGGATATAGGCATTACTGGAAATACAAGTTCATCTGCTCAGCAACCTAATCTGCGGGATGACACTTTGGAGACCGAGAAGTTAAGTCACACAAGATCAACTTCTACAAATGCTGACGGACTTGCACATTCAGATGAAAAGCTTGGTGCTGCGAGTTATTCTAGGAAGAATCAGAAGGGATTTACCTTTTCAAGGGTATCAGACGAATATGAAGGTAGAGAAGGCAACAACCTTGAAACCCCTTCCACCAAGGTAGAAAAGGCATGTGAGGGAATCAAGTCTGCTTGTGTTGAAGGTTCTGGGAAAGAATCTGCTGTTATTCAAGAGGGTAATGGAAATAATTTATTGCCTCGAAAGAGGACAAATGAAGCTGCTGCTTCTACCAAATTAAAATCAAGAAAGATCACTGGTAATGCAAAATTGTCTATTGAAAGGACGCCGCTAAAAAATGGTAAATCTCAAGGATTAAAAGTCCCATCTGTGGTTGATGAACCACCTATGTCGGATGGCTTTCTTTCTGTTGGCAAAGATGGTATAAATAACTCAAATACTTGCTTGCTTGCTAAATCTGCAGCTTCTGCCTCCAACTCAGTGGCAATTAATAAGCCTATCTCAGGAAATGCAGAGTTGGCTCAATGTAATAATGCTTATCTGAGTTCAGCACAAAAGGCTGTTCAGAGCTTAAGTAAGTCTAAAACTAGTGGTGATCCTGATATAACAGGTTTTGGAATGGGACAAGGTGATAACAAAGCAGAGGAGCATAATATCACTACAAACCTTGATTTTTCATCACCAGGAAAGAAGTCAAAGAGTGAAGGGTTTGCTGGTCTTGATGATTGGGATTTAAGCAATGAAGAAAACGATAAGCTGGTTAGAAAGTCACCCTGCAAGAAATCAACTGTCAAGAGAACTTTGGGTTCTAGACCCAGAAAAGGTGTTACTGCTAAACTGAAGAGTTCAGTTTGCTTGAATAAAACTATGCATCAAGATGAAGGCGGAAGTTCTTCCAGTGGAAGCAAAGAAATAGCAACTGCGGGTGCTAAGAAGCGTCAGGCATCACCTCCAATCCTTGATGTTAACAAATTGATGGAGCAAAAGGCGGTTAGTGAATATGCAGAAGATAATGGTGGCAGAACTGATATTTTGGATGACGAAACAGAGGCTCCAGATGACAAATGTGAATCTGAGTTGGGTATGGCTCCTGAAGAAGAATTGGTTCATCTTTCAAAAAAACTTGACACCTCAACAGAAGAGAAGTTAGAAGCAGTTGAACCTGATAAAAAATGTGAAGTAATGCCTCCTAAAAAATTCACAAATGAAACTGAAAAACAGAAATCACCTTCACTGTTAGACCCAACCTCAAAGTTGAGAGTAAAGCATCAAGCGATAAAGCGTCCTGCTAGTAAAACCAAGAAGCCCAGAGCTGCAAATAAAATAGCGAAGACTGTAGAGGCAGTATCGTTAGAGATGATTCCTAATGAGACAAGGGATGAGGCAGAAATAAAAATCCTGCCTCATCTAGAAGAGAAGTTAGAAGCAGTTGAACCTGATAAAAAATGTGAAGAAGCAGCGTCTCCTAAAAAATTCACCAATGAAACTGAAAAACAGAAACCACCTTCACTCTTAGACCCAACCTCAAAGTTAAAAGTAAAACATCAAGCAATAAAACGTCCCGCTAGTAAAACCAAGAAGCCCACAGCTGCAAAGAAAATAGCGGAAACTGTTGAGGTAGTATCCGGGGAGATGATTCCTAATGAGACAAGGGATGGGGCAGAGATAAAAACCCCGAGAGAAATGTCTGTACCTTCTGATATAAAATGCCCTGCTAGTAAAACCAAGAAGACCACAGCTGCAAAGAAGATAGCAAAATCTGTTGAGGCAGTATCTGGGGAGATGATTCCCAATGACACAAAGGATGAGACAAAGATAAAAATCCTGAAAGAAATGTCTGTACCTTCTGATATAAGTGAGAACTCAAATGCTCCAAGAAATAAGCCAGAGAATTTTGTTGAAGAGGAGAAGGAGAATAGACCAAATGTCGCAGAGCACGATTTAGTGGAGGAAAGAAGTGTTGGAAATCGAACTATTAAATCTAGTGTTAAGCCAGCAAATATAAAGTCTAAGAAAATGAAGCACAGTCCATCTATATCAGAATTTAATGCAAGAGTAAAAACTGAAGCTACATGTTTTATCTTAAGCGGCCATCGTCTACAAAGAAAGGAGTTTCAACAAGTAATCAAGTGTTTGAAAGGAAGGGTTTGCCGTGATTCTCATAAGTGGTCATATCAGGCAACACACTTCATTGTTCCAGACCCTATAAGGAGGACAGAGAAATTTTTTGCTGCTACTGCATCAGGAAGGTGGATTCTTAAAACTGATTACTTAACTGCTAGTAGCCAGGCAGGAAAATTCTTGCCAGAGGAGCCTTATGAGTGGCACAAAAATCATCTCACTGAGGATAGTGGTGCCATCAATATGGAAGCTCCAAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGACATGGTGCCTTTTATGGGATGCGTGTAGTTGTTTATGGCGACTATTTTGCTCCACCTTTGGATACTCTGAAGCGTGCGGTCAAAGCTGGGGATGGAACAATATTGGCGACATCTCCTCCTTATACTCGCTTCCTTAATAGTGGGGTTGACTATGCCATAGTTAGCCCTGGCATCCCAGATGTTGATATGTGGGTCCAAGAGTTCATAAAACATGAGATACCTTGTGTTGCAGCAGACTACTTGGTTGAGTATGTCTGCAAGCCTGGAGTCTCCCTTAAGAAACATGTACTGTATGACACTGAAGCCTGGGCGGATAGGTCATTTGAAAAACTTCAAATCAAGGCAGAAGAGATTATTGAAGAGGTCATTCCTCCTAAGGATTGCAATGATGATGATGATGATGATGATGATGTAGCTTGCCAAGTATGTGGCTCCCGGGAAAGAGGAAATGTCATGTTGATTTGTGGAGATGAAAGTGGATCTGTTGGCTGTGGAGTGGGTACCCATATCGATTGCTGCAACCCTCCGCTCACAGCTGTTCCTGAGGAAGATTGGTTTTGCCCAGAATGCAGTAGTGCTAAAAAATACTCAAAAAATCCCAAGAAAAAGAAAAAGGGTGCATTGTTTTCATCAAAGACCAAGTGA 4062 0.4151 MLETNHSPRVFRGVRFTLFGFDPLTESKIRFKLVNGGGIDAGKNTGNCTHVIVHNLVYDDPVCVAARDDGKTLVTALWVEHSADIGMAVDVTSVMYKPLKDLNGIPGAKDLFVCLTGYIHQDREDIMTMVGLMGAGFSKPLVANKVTHLVCYKFEGEKYVLAKRMGTIKLVNHRWLEDCLKDWVLLPEDKYNKSGFELEIMVEEAKDSEDEAEDSKLGQLGGRNISKSPPGSKFGTAVTHGLSKTLREEASNAIPDSTGPQVLPNVNNVEDPSTITRNKNNSDQDADLNNVSDLKAHGFQDIGITGNTSSSAQQPNLRDDTLETEKLSHTRSTSTNADGLAHSDEKLGAASYSRKNQKGFTFSRVSDEYEGREGNNLETPSTKVEKACEGIKSACVEGSGKESAVIQEGNGNNLLPRKRTNEAAASTKLKSRKITGNAKLSIERTPLKNGKSQGLKVPSVVDEPPMSDGFLSVGKDGINNSNTCLLAKSAASASNSVAINKPISGNAELAQCNNAYLSSAQKAVQSLSKSKTSGDPDITGFGMGQGDNKAEEHNITTNLDFSSPGKKSKSEGFAGLDDWDLSNEENDKLVRKSPCKKSTVKRTLGSRPRKGVTAKLKSSVCLNKTMHQDEGGSSSSGSKEIATAGAKKRQASPPILDVNKLMEQKAVSEYAEDNGGRTDILDDETEAPDDKCESELGMAPEEELVHLSKKLDTSTEEKLEAVEPDKKCEVMPPKKFTNETEKQKSPSLLDPTSKLRVKHQAIKRPASKTKKPRAANKIAKTVEAVSLEMIPNETRDEAEIKILPHLEEKLEAVEPDKKCEEAASPKKFTNETEKQKPPSLLDPTSKLKVKHQAIKRPASKTKKPTAAKKIAETVEVVSGEMIPNETRDGAEIKTPREMSVPSDIKCPASKTKKTTAAKKIAKSVEAVSGEMIPNDTKDETKIKILKEMSVPSDISENSNAPRNKPENFVEEEKENRPNVAEHDLVEERSVGNRTIKSSVKPANIKSKKMKHSPSISEFNARVKTEATCFILSGHRLQRKEFQQVIKCLKGRVCRDSHKWSYQATHFIVPDPIRRTEKFFAATASGRWILKTDYLTASSQAGKFLPEEPYEWHKNHLTEDSGAINMEAPRKWRLLKERTGHGAFYGMRVVVYGDYFAPPLDTLKRAVKAGDGTILATSPPYTRFLNSGVDYAIVSPGIPDVDMWVQEFIKHEIPCVAADYLVEYVCKPGVSLKKHVLYDTEAWADRSFEKLQIKAEEIIEEVIPPKDCNDDDDDDDDVACQVCGSRERGNVMLICGDESGSVGCGVGTHIDCCNPPLTAVPEEDWFCPECSSAKKYSKNPKKKKKGALFSSKTK* 1354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3723 1353 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1329 IPR044254 -
Psa6g3723 1353 MobiDBLite consensus disorder prediction 618 641 - -
Psa6g3723 1353 MobiDBLite consensus disorder prediction 666 684 - -
Psa6g3723 1353 Gene3D BRCT domain 1139 1238 IPR036420 -
Psa6g3723 1353 SMART BRCT_7 1140 1227 IPR001357 -
Psa6g3723 1353 SMART BRCT_7 8 86 IPR001357 -
Psa6g3723 1353 SMART BRCT_7 1020 1101 IPR001357 -
Psa6g3723 1353 SMART BRCT_7 106 183 IPR001357 -
Psa6g3723 1353 MobiDBLite consensus disorder prediction 732 751 - -
Psa6g3723 1353 Gene3D BRCT domain 98 219 IPR036420 -
Psa6g3723 1353 Pfam twin BRCT domain 112 175 IPR001357 -
Psa6g3723 1353 MobiDBLite consensus disorder prediction 322 342 - -
Psa6g3723 1353 MobiDBLite consensus disorder prediction 813 833 - -
Psa6g3723 1353 MobiDBLite consensus disorder prediction 593 700 - -
Psa6g3723 1353 Pfam BRCA1 C Terminus (BRCT) domain 1032 1096 IPR001357 -
Psa6g3723 1353 MobiDBLite consensus disorder prediction 1336 1353 - -
Psa6g3723 1353 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1329 - -
Psa6g3723 1353 Gene3D BRCT domain 1 95 IPR036420 -
Psa6g3723 1353 MobiDBLite consensus disorder prediction 756 777 - -
Psa6g3723 1353 CDD BRCT_TopBP1_rpt7 1028 1101 - -
Psa6g3723 1353 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Psa6g3723 1353 SUPERFAMILY BRCT domain 1028 1115 IPR036420 -
Psa6g3723 1353 MobiDBLite consensus disorder prediction 758 775 - -
Psa6g3723 1353 ProSiteProfiles Zinc finger PHD-type profile. 1276 1332 IPR019787 -
Psa6g3723 1353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1239 1345 IPR013083 -
Psa6g3723 1353 SUPERFAMILY FYVE/PHD zinc finger 1265 1338 IPR011011 -
Psa6g3723 1353 MobiDBLite consensus disorder prediction 205 235 - -
Psa6g3723 1353 MobiDBLite consensus disorder prediction 881 913 - -
Psa6g3723 1353 MobiDBLite consensus disorder prediction 813 867 - -
Psa6g3723 1353 MobiDBLite consensus disorder prediction 951 977 - -
Psa6g3723 1353 SUPERFAMILY BRCT domain 9 92 IPR036420 -
Psa6g3723 1353 MobiDBLite consensus disorder prediction 408 429 - -
Psa6g3723 1353 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Psa6g3723 1353 ProSiteProfiles BRCT domain profile. 1029 1111 IPR001357 -
Psa6g3723 1353 SMART PHD_3 1278 1330 IPR001965 -
Psa6g3723 1353 MobiDBLite consensus disorder prediction 1333 1353 - -
Psa6g3723 1353 Pfam PHD-finger 1279 1331 IPR019787 -
Psa6g3723 1353 Gene3D BRCT domain 1021 1138 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3723 Psa-Chr6 324490393 324498461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3723 129 244 Core DNA Replication Machinery Family AT4G02110 61.207 1.34e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa6g3723 BRCT 2.4e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3723 K10728 - gmx:100799144 1493.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3723 6 324490393 324498461 Psa6g3723 6 324490393 324498461 ECH