Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3713 ATGACATTCTTTCGACCTTCATCTTTCATAATCTTATTGGCATATGGTGCACTAATAGTTCTTGTAGCATTGACACCATGTTGGTATGTGATGGTCACACATATCCAAAAACGCGCGAATCTGCATTCGAAAAATATTATGTCGCATTTGCAATCTGAAATCGATGACTCTGCTGAATTGTTACAACCATTAAAATTTTCATCTGTAAAATTATCGAGATTATTGAGTTCGACTGTTAATTCGCCTAATATCACTTTCTCAGATATTAACACCAAGGTAGCTCCATTATTATTTCAAGCATTGAAGACAATTCCTCACTTAACACAAATTTCATTCATTGGAACTCAAGGTCTTTTTTTCACACACTATAATGATGGTGATCAAGTTCTAGCAATGTACTCTAATTCTTCTATAGTTGATGCATCGAATAAAACCATATACTATATTCAACATGTAAATCGTGACACGGGAGAGATTTTCGGGGAAGCCTTAATATCGAACAAGACTATCGATATCAAGACAAGTTTGATAAATGGTACAAACGATACTCGATGTGAATTTGCATCGATAGGAACGAAGTTGAACAATGTTAGTGAACTTATGTTCGTTAATTCGGCTAGAATCAATCAAATAGGTGTGATATCTCTTGGATTTTCGGCGAAAACAATAGCCGATTATGTCACTCGCTTTGTTGATCGTCAAGGGACGAAATCGTGTTTGGCTACCAAAGATGGAAATGTGATTGCAAAATGGAATCAAAATATTGGTTTGAAGATTTTAAAGGATAGTGTTTTATTACAATCTTTGAATGCTAATGGAGGTATAATAAGGAATGAAGGAGGTGTATCTTGCAAGAATCAAGTTTATGATTCTAGTTTGAATATTCAAGATACTCCATATTTTGTTCATTGCTATCCTATTGATATTATCGGAATAGAATCGGTGTATGTGATGGCTGTTCCGAAAAATGAAGTTTTCGGCTTCGAACCGAGATATAAAGAAAAAGGATTGATGCTCTTGATTATAATGATGTTGCTAATATTTATAGCTATGTCGAGTTTCGTATTCGTGAATATCGGAGTAACGAGAAGAGAAATGGATTTGTGTGCTTCACTGATAAAACAAATGGAAGCAACAGAACAGGCTGAGAGAAAGAATATGAATAAGAGTCTTGCTTTCGCGAGTGCTAGCCACGATCTCCGCGCTTATCTTGCAGGCCTTATCGGTTTGATCGAAATGTCTTCTAAGTTAGCACTATCTAATACAGGCACGGATTTGAAATCGCGTTCTGAATTGGAAACAAATTTCGAACAAATGGATAACTGCGCGCAAGACTTGCTAGGACTGTTGAATTCTATACTCGACACGAGCAAAATCGAGGCAGGGAAAATGCAGCTAGAGGAAGAGGAGTTTGATTTATCTTATCTTGTTGAAGATGTGGTTGATTTGTATTATCCGATGGCAATGAAGAAAGGTGTAGAGCTTGTGTTGGACTCTTGTAATGGTTCTGTTATCAAGTATTCGCGCGTGAAAGGCGATAGGAGGAAATTGAAGCAGATTTTGTGTAACTTGCTTAGCAATGCTGTTAAATTTACGGACGAAGGACACATAACGGTTAGAGCGTGGACGCAGAAATCGACATTGCAGAAGTCGATAATCAAGAGTAATCAGAATAGTGTTATGAAGCCTCTGTCTTGGATGTTTTTTAAGAAAAGTGATCAAGAGATTGAGGATGTAGAAGCGGTGAGTTCGATTCAACAAGATGCGTGTTTTATGGATTTTGTGTTTGAAGTTGATGATTCGGGAAAAGGAATTCCGAAAGAGAATTATAAGTCGGTTTTCGAGAATTATGTTCAAGTTAAAGAGAATGCTGTTGGTCAAGTTGGAACTGGCTTGGGACTTGGAATTGTGCAGTCACTGGTACGTTTGATGCATGGAGATATTGAAATTGTGGACAAAGAAGTTGGCAAGAAAGGAACATGTTTCAAGTTCAATGTGCTTCTTGCTTTATGTGAAAACGAGACGGTAACTTATAGTGTAAGGGAAGGTTTTGAATATGGATCGACATCGGGCAACGGAAACCAAGTTCCGGAGAAAAGATTCATTCACAATGCTAGTTCTAGTTCGAGTATTCGATCTTTGAGTCCAAGGTTACAAATTTGTCCCTCTTCTAGTCCTAAGACCGAGCCTTCGCATGTTATTCTTTACATGAGGGACGAAGAAAGAAGAAGAACTTCGCAGATGTTCATAGAGAGTTTAGGGATCAAAGTTAAAGTGGTGAAGAATCGGAAACATCTCATTGATACTCTCAAGAAGATAAAGAAACAAAATGGTCACCAAATAAGTGATCAAAGTTCTTCTGAGTCTTCGGAATTAGGTTCTCGGTGTACGTCTTATAACTCTTCTTATAGTAGAGCTTCGACAAAAATTCCTTTAAGAGCTTTGGACGGAGCTGAATACGTATCTTCAATGTTCAAGATGACAAACAACGGAGCTGCACCAAGTTTTGTTTTGATTATCATTGATGCAAACGCGGGACCGTTTCCTAAGCTTTGTAACATTGTGTCGAAATTTAAGAAAGATCTTGCCAATCCTAGTAAAATTGTTTGGTTGGAAAAGCCTTTTGAAAGTAGCGTTGATCTCAAAACAATTGATCAAGATGACATTGTGATCTCAAAACCGTTTCATGGAACTAGGTTATTTCAAGTTATAAAGTTTCTTCCCGAGTTCGGTGGGAATTGGAAAAACAATTCTAGTAACAAAGCTTTACGAGAATTAAGATCACAAGTATCTTCTCACAACGAAAGTGTGTATCTAAACACGAAATCTTGTAGGGAGAAGAAAACTTATGTCGATCAAAGTGAAATAGAAGAATGTGCAAGAGACTCGGATAACTCAAAACCTTTAAGTGGAAAGAAATTTATGGTTGTTGATGATTCTCCCATGTTGAGAAAGATTGCTATGGCTACTTTGAGTTCCCTTGGTGTGACTAGTATTGATCAATGTGAAAATGGTAAAGAGGCTTTAAAACAAGTTGAACAAGGTTTAAAAAATAATTTTCCTATTCCTCCTTATGATTACATCTTAATGGATTGTCAGATGCCGGAGATGGATGGATTCGAGGCAACAAGGAAGATAAGAGAAATGGAGAAAGAATATGGTGTACATATTTCTATCATTGCATTATCTGCTGAGATTGATAAATTGACAACAGAGACTGGAATGGATTTTCACATAACTAAGCCTATTAAGAAAGAGCATTTACTCAAAGCTATTACATACATAGAAAATAGTGAGATATAA 3303 0.3675 MTFFRPSSFIILLAYGALIVLVALTPCWYVMVTHIQKRANLHSKNIMSHLQSEIDDSAELLQPLKFSSVKLSRLLSSTVNSPNITFSDINTKVAPLLFQALKTIPHLTQISFIGTQGLFFTHYNDGDQVLAMYSNSSIVDASNKTIYYIQHVNRDTGEIFGEALISNKTIDIKTSLINGTNDTRCEFASIGTKLNNVSELMFVNSARINQIGVISLGFSAKTIADYVTRFVDRQGTKSCLATKDGNVIAKWNQNIGLKILKDSVLLQSLNANGGIIRNEGGVSCKNQVYDSSLNIQDTPYFVHCYPIDIIGIESVYVMAVPKNEVFGFEPRYKEKGLMLLIIMMLLIFIAMSSFVFVNIGVTRREMDLCASLIKQMEATEQAERKNMNKSLAFASASHDLRAYLAGLIGLIEMSSKLALSNTGTDLKSRSELETNFEQMDNCAQDLLGLLNSILDTSKIEAGKMQLEEEEFDLSYLVEDVVDLYYPMAMKKGVELVLDSCNGSVIKYSRVKGDRRKLKQILCNLLSNAVKFTDEGHITVRAWTQKSTLQKSIIKSNQNSVMKPLSWMFFKKSDQEIEDVEAVSSIQQDACFMDFVFEVDDSGKGIPKENYKSVFENYVQVKENAVGQVGTGLGLGIVQSLVRLMHGDIEIVDKEVGKKGTCFKFNVLLALCENETVTYSVREGFEYGSTSGNGNQVPEKRFIHNASSSSSIRSLSPRLQICPSSSPKTEPSHVILYMRDEERRRTSQMFIESLGIKVKVVKNRKHLIDTLKKIKKQNGHQISDQSSSESSELGSRCTSYNSSYSRASTKIPLRALDGAEYVSSMFKMTNNGAAPSFVLIIIDANAGPFPKLCNIVSKFKKDLANPSKIVWLEKPFESSVDLKTIDQDDIVISKPFHGTRLFQVIKFLPEFGGNWKNNSSNKALRELRSQVSSHNESVYLNTKSCREKKTYVDQSEIEECARDSDNSKPLSGKKFMVVDDSPMLRKIAMATLSSLGVTSIDQCENGKEALKQVEQGLKNNFPIPPYDYILMDCQMPEMDGFEATRKIREMEKEYGVHISIIALSAEIDKLTTETGMDFHITKPIKKEHLLKAITYIENSEI* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3713 1100 CDD HisKA 386 458 IPR003661 GO:0000155|GO:0007165
Psa6g3713 1100 Gene3D - 371 463 - -
Psa6g3713 1100 PANTHER TWO-COMPONENT HISTIDINE KINASE 35 1093 - -
Psa6g3713 1100 ProSiteProfiles Response regulatory domain profile. 973 1096 IPR001789 GO:0000160
Psa6g3713 1100 ProSiteProfiles Histidine kinase domain profile. 395 670 IPR005467 -
Psa6g3713 1100 Gene3D - 464 674 IPR036890 -
Psa6g3713 1100 Pfam His Kinase A (phospho-acceptor) domain 391 462 IPR003661 GO:0000155|GO:0007165
Psa6g3713 1100 SMART HisKA_10 388 462 IPR003661 GO:0000155|GO:0007165
Psa6g3713 1100 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 512 668 IPR003594 -
Psa6g3713 1100 SUPERFAMILY CheY-like 970 1095 IPR011006 -
Psa6g3713 1100 PANTHER HISTIDINE KINASE CKI1-LIKE 35 1093 - -
Psa6g3713 1100 SMART REC_2 972 1092 IPR001789 GO:0000160
Psa6g3713 1100 MobiDBLite consensus disorder prediction 779 793 - -
Psa6g3713 1100 Pfam Response regulator receiver domain 975 1092 IPR001789 GO:0000160
Psa6g3713 1100 Gene3D - 950 1098 - -
Psa6g3713 1100 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 376 464 IPR036097 GO:0000155|GO:0007165
Psa6g3713 1100 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 451 665 IPR036890 -
Psa6g3713 1100 SMART HKATPase_4 512 670 IPR003594 -
Psa6g3713 1100 MobiDBLite consensus disorder prediction 774 793 - -
Psa6g3713 1100 CDD REC_hyHK_CKI1_RcsC-like 974 1092 - -
Psa6g3713 1100 PRINTS Bacterial sensor protein C-terminal signature 594 608 IPR004358 GO:0016310|GO:0016772
Psa6g3713 1100 PRINTS Bacterial sensor protein C-terminal signature 612 622 IPR004358 GO:0016310|GO:0016772
Psa6g3713 1100 PRINTS Bacterial sensor protein C-terminal signature 628 646 IPR004358 GO:0016310|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3713 Psa-Chr6 323752787 323756611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3713 5 1097 Histidine Kinase Gene Family AT2G47430 37.913 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa6g3713 HATPase_c 7.4e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3713 - - cam:101504256 1211.82