Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3712 ATGGGAGGAGAAGTTGTTTTGTTCATTGATGATTTGAAACCAATTTCAGGATTTTCTCGTTGTAGAATATGTCATGAAGAAGAATTTGAAAGCTTCAAAAGCTTAGAAGCTCCTTGTGCTTGTTCCGGAACAGTCAAGTTCGCTCATAGAGATTGCATTCAAACATGGTGCAATGAGAAAGGAAACACAACTTGTGAAATTTGCTTACAACAATATGAACCTGGATATACAGCACCAGCACCAAAGAAATGTAAAAATTCTAATGAAGTAATGACCATTAGATATAGCCTTGAGATATCAAGGAGAGAAGAAGAAGCATTATTGAACAGAAGAATAGTTGAATATGAAGAAGGTGTAAGAGAAAACAATTACGTTGAATGCACTTATGCTGCTGATAGAAGCGCGTTTTGTTGTCGATCACTGGCTTTAGCTTTTACTCTCCTATTACTTCTAAGACATCTTTTTGCTTTGCTTACAAGTGGAATGGAAGATTACCCATTCACAATTCTTACGATTTTTATACTAAGGGCCAGTGGAATTATTATACCTATGTGTATAATTATTAGAACTATGGGAGCCATTCATAAAAGTATCCAGCGTCATTATCATCATCAGGATTCTGATGATGACTCGTCAATGTCTGATGGAGATGATGAAGAAAATGGGACACCACATATTTCAATTTTAAGACATTCACATTATTAA 705 0.3518 MGGEVVLFIDDLKPISGFSRCRICHEEEFESFKSLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAPAPKKCKNSNEVMTIRYSLEISRREEEALLNRRIVEYEEGVRENNYVECTYAADRSAFCCRSLALAFTLLLLLRHLFALLTSGMEDYPFTILTIFILRASGIIIPMCIIIRTMGAIHKSIQRHYHHQDSDDDSSMSDGDDEENGTPHISILRHSHY* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3712 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 79 IPR013083 -
Psa6g3712 234 SMART ringv_2 20 69 IPR011016 GO:0008270
Psa6g3712 234 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 3 231 IPR033275 -
Psa6g3712 234 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 3 231 - -
Psa6g3712 234 Pfam RING-variant domain 21 68 IPR011016 GO:0008270
Psa6g3712 234 SUPERFAMILY RING/U-box 19 73 - -
Psa6g3712 234 CDD RING_CH-C4HC3_MARCH 21 68 - -
Psa6g3712 234 Pfam Protein of unknown function (DUF3675) 74 191 IPR022143 -
Psa6g3712 234 ProSiteProfiles Zinc finger RING-CH-type profile. 13 75 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3712 Psa-Chr6 323718632 323720281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3712 21 68 C3H Transcription Factor Family AT2G37950 44.898 4.92e-07 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3712 6 323718632 323720281 Psa6g3712 6 323718632 323720281 ECH
Psa3g0469 3 44521868 44523642 Psa6g3712 6 323718632 323720281 PCT