Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3683 ATGTCTGTTGACATAACAAGATACACAGATGAGGAGTATGAGAAATATTTGGCAAATCCTAACTGGACCAAGGAGGAAACAGATCAACTGTTTGACTTGTGTGATAGGTTTAATCTCAAATTCATTGTTATAGCTGATAGGTTTCCTTCATCTCGAACTGTTGAAGAATTAAAGGATCGATATTATAGTGTATCTCGGGCTATACTAATTGCTAGGAATCCATCTTCTAGGGATGGTGCTGTGGATCCACTTGTTAAGGAACCTTATAACGTTTCACAGGAGATCAAGCGGAAACGAGCTCTGTCTCTAATCCTCTCGCAAACAAAACGACAAGAGCGTATAGATGAAGAGGTACTTGCTGAAGCAAAAAGAATTTCTGAATTACGCATAAAGGTTGCCGGAGAGTCTAAGTCGGTTGCTGCTTCAATTTCTAGTGCAGATGTTACAGAGAGGGCCAGCCCCAATGAAACTGTATCCCCATCAAATATGCAACGCGGATCGGCAGTATTGCCTTCCACAATAACGGGAGATAATCTTGGCTCGATTCATGTCTATTTAAGAACCGACGCACTTGCTTACATGATGAACAAACACTTATCAGTTGAGTATCAGACTAGCCTCCAACAAGCTTTTCGGAGACTTGGGGTCAATCCGACACCAAGGGTTCCATCAATAACTGTTTGTTTTGAGTATCTTAAACTAAGAAATGACATAGTAACTTTCACGAATCTAATAGGTCAGATCCGTCGCCTTCAGCTGCAGAATGAGGCGGCCAACGGTTCATCTTTTCGTGATGGTTCACACGGAACATTGACGCATTTGCATCGTGAAGAAGATCTGGATTGGATTCCTGGTAAAACAGACTCTGGGGGGGCAACAACTGGTAAAAAGGATCAAAAGAGCAAGGCGTCAGGACAACGTAAAAAAGCTTCATCAACAGCCCAATCAAAAAGAAAGAGAAAATAA 966 0.4182 MSVDITRYTDEEYEKYLANPNWTKEETDQLFDLCDRFNLKFIVIADRFPSSRTVEELKDRYYSVSRAILIARNPSSRDGAVDPLVKEPYNVSQEIKRKRALSLILSQTKRQERIDEEVLAEAKRISELRIKVAGESKSVAASISSADVTERASPNETVSPSNMQRGSAVLPSTITGDNLGSIHVYLRTDALAYMMNKHLSVEYQTSLQQAFRRLGVNPTPRVPSITVCFEYLKLRNDIVTFTNLIGQIRRLQLQNEAANGSSFRDGSHGTLTHLHREEDLDWIPGKTDSGGATTGKKDQKSKASGQRKKASSTAQSKRKRK* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3683 321 Pfam SANT/Myb-like domain of DAMP1 2 68 IPR032563 -
Psa6g3683 321 SUPERFAMILY Homeodomain-like 19 69 IPR009057 -
Psa6g3683 321 Gene3D - 1 77 - -
Psa6g3683 321 SMART sant 18 67 IPR001005 -
Psa6g3683 321 MobiDBLite consensus disorder prediction 275 321 - -
Psa6g3683 321 PANTHER BNAA04G26950D PROTEIN 2 321 - -
Psa6g3683 321 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 2 321 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3683 Psa-Chr6 321403096 321408177 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa6g3683 SANT_DAMP1_like 1.9e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3683 K11324 - gmx:100818926 316.62