Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3681 ATGGAGCAGAACTCTCTTCCTCATAACGAGTCTCTGAGAAAACCGAATAGCATTCCTCAGAAGGTTAATGAAGTTAATGGTGGATTGGCACCTCTTATGCCTGCGGTTGATTGGAAAATAAAGCCTCCATCAGATAAAAAGGTTACTTGGCAATGGCTTCCTTTCAAACATTCTGCTCGTAAAGATGATCTTCAGCTTAGCCATTGGGTTAAAGTTGTAAATGGTGTTCCACCATCAGGGGACTATTCTTTTGCCAAGTATAACATGTCTGTTGACATAACAAGATACACAGATGAGGAGTATGAGAAATATTTGGCAAATCCTAACTGGACCAAGGAGGAAACAGATCAACTGTTTGACTTGTGTGATAGGTTTAATCTCAAATTTATTGTTATAGCTGATAGGTTTCCTTCATCTCGAACTGTTGAAGAATTAAAGGATCGATATTATAGTGTATCTCGGGCTATACTAATTGCTAGGAATCCATCTTCTAGGGATGGTGCTGTGGATCCACTTGTTAAGGAACCATATAACGTTTCACAGGAGATCAAGCGGAAACGAGCTCTGTCTCTAATCCTCTCTCAAACAAAACGACAAGAGCGTAGAGATGAAGAGGTACTTGCTGAAGCAAAAAGAATTTCTGGATTACGCATAAAGGTTGCCGGAGAGTCTAAGTCGGTTGCTGCTTCAAATTCTAGTGCAGATGTTACAGAGAGGGCCAGCCCCAATGAAACTGTATCTCTATCAAATATGCAACGCCGATCGGCAGTATTGCCTTCCACAATAACGAGAGATAATCTTGGCTCGACTCATGTCTATTTAAGAACCGACGCACTTGCTTACATGATGAACAAACACTTATCAGTTGAGTATCAGACTAGCCTCCAACAAGCTTTTCGGAGACTTGGGGTCAATCCGACACCAAGGGTTCCATCAATAACTGTTTGTTTTGAGTATCTTAAACTAAGAAATGACATAGTAACTTTCACGAATCTAATAGGTCAGATCCGTCGCCTTCAGCTGCAGAATGAGGCGGCCAACGGTTCATCTTTTCGTGATGGTTCACACGGAACATTGACGCATTTGCATCGTGAAGAAGATCTGGATTGGATTCCTGGTAAAACAGACTCTGGGGGTAATAACAGATTAGTTTTGCTTTCACCTGCTATGTGA 1173 0.4152 MEQNSLPHNESLRKPNSIPQKVNEVNGGLAPLMPAVDWKIKPPSDKKVTWQWLPFKHSARKDDLQLSHWVKVVNGVPPSGDYSFAKYNMSVDITRYTDEEYEKYLANPNWTKEETDQLFDLCDRFNLKFIVIADRFPSSRTVEELKDRYYSVSRAILIARNPSSRDGAVDPLVKEPYNVSQEIKRKRALSLILSQTKRQERRDEEVLAEAKRISGLRIKVAGESKSVAASNSSADVTERASPNETVSLSNMQRRSAVLPSTITRDNLGSTHVYLRTDALAYMMNKHLSVEYQTSLQQAFRRLGVNPTPRVPSITVCFEYLKLRNDIVTFTNLIGQIRRLQLQNEAANGSSFRDGSHGTLTHLHREEDLDWIPGKTDSGGNNRLVLLSPAM* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3681 390 Pfam SANT/Myb-like domain of DAMP1 82 156 IPR032563 -
Psa6g3681 390 SUPERFAMILY Homeodomain-like 107 157 IPR009057 -
Psa6g3681 390 MobiDBLite consensus disorder prediction 229 252 - -
Psa6g3681 390 PANTHER BNAA04G26950D PROTEIN 2 360 - -
Psa6g3681 390 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 2 360 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Psa6g3681 390 Gene3D - 79 165 - -
Psa6g3681 390 SMART sant 106 155 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3681 Psa-Chr6 321381753 321386610 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa6g3681 SANT_DAMP1_like 1.4e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3681 K11324 - gmx:100818926 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3681 6 321381753 321386610 Psa6g3681 6 321381753 321386610 ECH