Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3680 ATGGAAGCTAGATTGGGTGCTGAGGGTTATAATTTTTATGGTGTTGGTGGTTCCTCTAATTTGAGTAGTATAGGGAAAAGGTCTAGAGAATGGAATTTGAATGATTGGAGATGGGATGGTGATTTGTTCATAGCTAGCCGTGTGAATCCGGTGCCAGCGGATAGTCTGAGAGTGGGACAGCAATTTTTTCCTCTTGGGTCTGGGATCTCGGTAGCCGGGGGTTCCTCCAACACCTCTTCTTCATGCTCTGAGGAAGGAGATCTTGAGAATCCCAAAAGAAACAAAGAAGGGGAGAGGAAAAGGAGAGTTATTGTTCTGGAAGATGATGGTTTGAATGAGGAAACTGGTGCTCTTAGCCTAAATCTTGCAGGACATGCTTCACCGGTGGTGGAAAGGGAGATTACAAGCTGGGATGGTATAAATGGAAAGAAAAGCAAAGTAGCTGGAGGTACTTCGAATCGAGCTGTTTGTCAGGTTAAAGATTGTGGTGCAGATCTGAGCAGAGGTAAGGATTATCACAGACGTCATAAAGTTTGTGAGATGCATTCTAAGGCTAGTAGAGCACTTGTGGGGAATGCAATGCAGAGGTTTTGTCAACAGTGTAGTAGGTTTCACATGCTTCAAGAGTTCGATGAAGGAAAGAGAAGCTGTCGAAGACGCTTGGCTGGCCATAATAAACGGAGAAGGAAAACAAATACTGAAGTTGTTCCTAATGGAAGTCCAACAAATGATGATCAGACCAGTAGTTATCTCTTGATAAGTTTATTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGATCAGCCTACAGATCAGGATCTTCTAACTCATCTTCTAAGGAGTCTTGCTAGTCAGAATGATGAGCAAGGGAGCAAGAACTTGTCAAACCTTTTGCATGAACAAGAGATTTTGTTGAGAGAAGGGGATTCTTCTAGGAAGTCAGAGATGGTGTCAGCTTTATTCTCCAATGGTTCTCAAGGCTCTCCAACTGTTATAGCACAAAACCAAATATCTAGGAATAAAATGCAACAAGAAATGATGCATACTCATGATGTTAGGACCGTTGATCATCACCTCGTATCTTCAATAAAGCCCAGCATTTCAAACAGTCCTCCTATTTACTCAGAAATCAGAGATAGTAGTGCACAAATAAAGATGAATAATTTTGATTTGAATGACATATACATTGACTCAGATGATGGCATGGAAGATATAGAAATATTGCCAGTCTCTACAAATATTGGCACTAGCTCTGTTGATTACCCATGGACACAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGTGGAGAAGCTCAGAGTCGTACAGACCGGATTGTTTTTAAACTCTTTGGTAAAGAGCCAAATGAATTTCCTCTTGTACTTAGAGCACAGATTCTTGATTGGTTATCCCACAGTCCTACCGACATTGAGAGCTACATACGACCTGGTTGTATTGTTTTGACTATCTATTTGCGTCAGGCTGAGGCTGTGTGGGACGATCTGTGCTGTGATCTGACTTCCAGTTTGAGTAAGCTGCTGGATGTCTCAGATAATACATTTTGGAGAACTGGATGGGTTCATTTCAGGGTGCAGCATCAAATGGCATTCATTTTCAATGGTCAAGTTGTAATAGATACATCACTACCTTTTAGAAGCAACAATTATAGTAAGATTTTGACTGTTAGTCCAATTGCTGTACCAGCATCAAAGAGAGCTCAATTTTCTGTTAAAGGTGTAAACCTAATGCGCCCTGCCACAAGGTTAATGTGTGCTTTAGAAGGAAACTATCTGGTGTGTGAAGATGCTCATGAGTCAACAGATCAAAACTCCAAGGAGCTTGATGCACTTCAGTGCATTCAATTTTCATGTTCGGTCCCTGTGACGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGCTTGAGTAGCAGCTTCTTTCCTTTCATAGTGGCAGAGGAGGATGTTTGCTCAGAGATTCGTGTGCTTGAGCCTTTACTTGAACTAAGTGAAACTGATCCAGATATTGAAGGGACTGGAAAATTTAAAGCCAAAAGTCAAGCTATGGATTTCATTCATGAAATGGGATGGCTTCTTCACAGAAGTCAATTGAAATATAGGATGGTTCACTTGAACTCTGATGTAGATCTCTTTCCATTAGAACGGTTCACGTGGCTTATGGAGTTTTCCATGGACCATGATTGGTGTGCAGTGGTGAAAAAACTGTTGAATGTACTGCTTGATGAAACTGTGAACAAAGGAAATCACCCTACCCTGTATCAAGCACTTACAGAAATGGGCCTCCTTCACAGAGCCGTAAGGAGAAATAGCAAGCAGTTAGTGGAGTTGCTCTTGAGATATGTTCCTAAAAATACATCTCAAGAACTAAGACCCGAAGTCAAGGCACTAGGTGATGGAGATACTCTTAGCTTCTTGTTTAGACCTAATGCTGTTGGTCCTGCTGGTTTGACACCACTCCATATAGCGGCGGGAAAAGATGGTTCTGAGGATGTACTGGATGCTCTTACTAATGATCCTAGCATGGTGGGAATTGAAGCATGGAAGAATGCCCGTGACAGCACAGGCTCCACACCTGAGGATTATGCACGATTACGCGGCCATTATACTTACATTCACTTAGTGCAGAAAAAAATTAACAAGAGACAAGGAGGAGCTCACGTGGTAGTTGAGATTCCAAGCAATCAGACAGAGTGCAATACAAATCAGAAACAGAAGCAAATTGAGTCTCTCACTGGATTTGAGATTGGAAAAGCTGAAGTAAAACGTGGCCAAGGGCACTGTAAACTTTGTGATACTAAAATTTCTTGTAGAACTGCAGTAGGGAGGTCTATGGTATACAGACCTGCAATGCTCTCTATGGTGGCCATAGCAGCAGTCTGTGTTTGTGTGGCTCTTCTATTCAAAAGCTCACCTGAAGTTCTATACATGTTCCGTCCTTTCAGATGGGAATCATTGGATTTTGGGACAAGTTAA 3045 0.4187 MEARLGAEGYNFYGVGGSSNLSSIGKRSREWNLNDWRWDGDLFIASRVNPVPADSLRVGQQFFPLGSGISVAGGSSNTSSSCSEEGDLENPKRNKEGERKRRVIVLEDDGLNEETGALSLNLAGHASPVVEREITSWDGINGKKSKVAGGTSNRAVCQVKDCGADLSRGKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNTEVVPNGSPTNDDQTSSYLLISLLKILSNMHSDRSDQPTDQDLLTHLLRSLASQNDEQGSKNLSNLLHEQEILLREGDSSRKSEMVSALFSNGSQGSPTVIAQNQISRNKMQQEMMHTHDVRTVDHHLVSSIKPSISNSPPIYSEIRDSSAQIKMNNFDLNDIYIDSDDGMEDIEILPVSTNIGTSSVDYPWTQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNEFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQAEAVWDDLCCDLTSSLSKLLDVSDNTFWRTGWVHFRVQHQMAFIFNGQVVIDTSLPFRSNNYSKILTVSPIAVPASKRAQFSVKGVNLMRPATRLMCALEGNYLVCEDAHESTDQNSKELDALQCIQFSCSVPVTNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEIRVLEPLLELSETDPDIEGTGKFKAKSQAMDFIHEMGWLLHRSQLKYRMVHLNSDVDLFPLERFTWLMEFSMDHDWCAVVKKLLNVLLDETVNKGNHPTLYQALTEMGLLHRAVRRNSKQLVELLLRYVPKNTSQELRPEVKALGDGDTLSFLFRPNAVGPAGLTPLHIAAGKDGSEDVLDALTNDPSMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGGAHVVVEIPSNQTECNTNQKQKQIESLTGFEIGKAEVKRGQGHCKLCDTKISCRTAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFRPFRWESLDFGTS* 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3680 1014 Pfam SBP domain 157 230 IPR004333 GO:0003677
Psa6g3680 1014 Gene3D - 148 218 IPR036893 GO:0003677|GO:0005634
Psa6g3680 1014 ProSiteProfiles Zinc finger SBP-type profile. 154 231 IPR004333 GO:0003677
Psa6g3680 1014 MobiDBLite consensus disorder prediction 221 244 - -
Psa6g3680 1014 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1013 IPR044817 GO:0003677
Psa6g3680 1014 MobiDBLite consensus disorder prediction 425 458 - -
Psa6g3680 1014 SUPERFAMILY Ankyrin repeat 726 897 IPR036770 -
Psa6g3680 1014 MobiDBLite consensus disorder prediction 74 100 - -
Psa6g3680 1014 Gene3D - 699 904 IPR036770 -
Psa6g3680 1014 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1013 - -
Psa6g3680 1014 SUPERFAMILY SBT domain 155 236 IPR036893 GO:0003677|GO:0005634
Psa6g3680 1014 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3680 Psa-Chr6 321212836 321219423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3680 1 1014 SBP-box Gene Family AT3G60030 54.017 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa6g3680 SBP 1.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3680 - - gmx:100809806 1641.71