LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g3669	ATGGTTCCAAAAACTCATCTCCAATGCATTCTATTTCTTCTTTCATTGTTATACACCACTTGCAGATTAGAAATGGAGTCTGATTTTGACAAGTGGGTATCATGGAACATGAAGAGTCACCAAAGAAAGACCATTCTAGAAAACAAAAGAAGTGGTCTTGATTTGAAGCTACAACAAGCAGAGAGTAACAAAACTATCTTAACAGTTAGCAAAGATGGTGGTGCTGATTTCAACACTATAAATGAAGCTATTAATAGCATTTCACCACACAATACTAGAAGAGTTGTTGTATCCATTGCACCTGGTGTTTATAGGGAGAAGGTTGTCATCCCCGAATCATTGCCATTTGTAACATTTTTAGGAAATGCAAATGATCAGCCGACTATCAGTGCAAATGATACATCATCTGTTACGCGAAGTGATGGGACTACGTTGAAGACGTTCAATAGTGCAACCGTTGCTGTGAATGCTAGCTATTTTATAGCCATTAATATTATATTTGAGAATAATGCTTCATATTTGGAATCGAAAGTAGAACAAGCTGTTGCGCTTCGAATCTCTGGAAATAAATCAGCTTTTTACAATTGTTCTTTCTATGGAGTTCAAGACACTTTGTATGATCACAAAGGCATTCACTATTTCAAAAACTGTTTTATTCAAGGTTCAACTGATTTCATATTTGGCTATGGGAGGACTCTTTATGAGAATTGCACTCTAAATTCCGTAACCAAGAACGTGACCTCCATCACAGCTCAAAAGCGATCAAACTCGTCTCTTGATAGTGGATTTTCCTTCAAAAATTGCAATGTAACAGGTAGTGGACATGTTTATCTTGGAAGACCATGGGGAGAATATTCCAGAGTTGTATATTCTTACACGTTCATGGACACAATTGTTCTCCCTAAAGGATGGGATGAGAGTTGGGGTGACCAAAAGCGTAACATGACGGTATATTATGGAGAGTACAAGTGTAGTGGACCTGGATCCAACTTGTCGAAAAGAGTTCCATGGGCACGGATGCTAACGGACGAAGAGGCCCAACTTTTTATTGGAATCGATTTTATTCAAGGGGATACTTGGCTCATTAGCCCTTAA	1095	0.3826	MVPKTHLQCILFLLSLLYTTCRLEMESDFDKWVSWNMKSHQRKTILENKRSGLDLKLQQAESNKTILTVSKDGGADFNTINEAINSISPHNTRRVVVSIAPGVYREKVVIPESLPFVTFLGNANDQPTISANDTSSVTRSDGTTLKTFNSATVAVNASYFIAINIIFENNASYLESKVEQAVALRISGNKSAFYNCSFYGVQDTLYDHKGIHYFKNCFIQGSTDFIFGYGRTLYENCTLNSVTKNVTSITAQKRSNSSLDSGFSFKNCNVTGSGHVYLGRPWGEYSRVVYSYTFMDTIVLPKGWDESWGDQKRNMTVYYGEYKCSGPGSNLSKRVPWARMLTDEEAQLFIGIDFIQGDTWLISP*	365

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Psa6g3669	364	SUPERFAMILY	Pectin lyase-like	64	361	IPR011050	-
Psa6g3669	364	Coils	Coil	43	63	-	-
Psa6g3669	364	ProSitePatterns	Pectinesterase signature 2.	219	228	IPR033131	-
Psa6g3669	364	Pfam	Pectinesterase	68	358	IPR000070	GO:0030599\|GO:0042545
Psa6g3669	364	PANTHER	PECTINESTERASE	22	362	-	-
Psa6g3669	364	PANTHER	ACYL-COA THIOESTER HYDROLASE YBHC-RELATED	22	362	-	-
Psa6g3669	364	Gene3D	-	60	363	IPR012334	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g3669	Psa-Chr6	319143806	319146192	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa6g3669	24	364	Carbohydrate Esterase	AT5G07430	40.816	6.58e-91	275

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g3669	K01051		-	cit:102614801	482.256

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa6g3669	6	319143806	319146192	Psa6g3669	6	319143806	319146192	ECH
	Psa3g0908	3	86512640	86514356	Psa6g3669	6	319143806	319146192	PCT

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