Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3668 ATGGATACCAACTACCAAACCAGTATTCATGTAACGAGGAGTTTATCAGATTGTGGTTCATTAGCAACAAATGTAAGTGAAGAAGATTCTATGGTAGTAAAGAAAGGTCCATGGATAGAAGAGGAGGATACTGTTCTGATGAACTATGTGGCTGTTCACGGCGAAGGTCACTGGAACTCCGTCGCTCGCTGTTCCGGTCTAAAGAGAACAGGAAAAAGCTGCAGGTTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGGAATATCACTCTCCAAGAACAGCTCTTGATTCTCGATCTCCATTCTCGTTGGGGCAACCGATGGTCTAAAATAGCGGAACAATTGCCGGGAAGAACGGACAATGAGATAAAGAACTATTGGAGGACAAGAGTGGTGAAGCAAGCAAGGCAACTCAAATGTGATGTAAACAGCCAGCTGTTCAGAGACACATTGCGTTTCGAATGGATTCCACGTCTCATCGAGAGGATTCAGTCGACTCGTGCGACTGCCGATACTAGTTTATATGATCATCAACAAGGCACCAATTGTAACAATACTAAAGCGCACAGTGAAACTTGTGGGACAAATGCAAATCCTCCTCCATTGTTGATGTCTGAGGTTTCATCGTACTCGTCAGGGGTTGATGTTCCAGTGGAATCAAACCTATCTTACAATGTAATGGAAATGAAGGAATTGGGATCCACATGGCAGGATTGGAATTGCTTAGACACAAATATTCAAGAATTTGAACATGACAATGATTTTGGTGGATCAGAGTTGTGGACAGAAGAAAACATATGGTTCTTGCAGCAACAACTTGCTGATGATTTATGA 840 0.4274 MDTNYQTSIHVTRSLSDCGSLATNVSEEDSMVVKKGPWIEEEDTVLMNYVAVHGEGHWNSVARCSGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQARQLKCDVNSQLFRDTLRFEWIPRLIERIQSTRATADTSLYDHQQGTNCNNTKAHSETCGTNANPPPLLMSEVSSYSSGVDVPVESNLSYNVMEMKELGSTWQDWNCLDTNIQEFEHDNDFGGSELWTEENIWFLQQQLADDL* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3668 279 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 23 273 IPR044676 GO:0003700|GO:0006355|GO:0043565
Psa6g3668 279 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 23 273 - -
Psa6g3668 279 SMART sant 87 135 IPR001005 -
Psa6g3668 279 SMART sant 34 84 IPR001005 -
Psa6g3668 279 Gene3D - 92 133 - -
Psa6g3668 279 CDD SANT 92 131 IPR001005 -
Psa6g3668 279 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Psa6g3668 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Psa6g3668 279 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Psa6g3668 279 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Psa6g3668 279 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Psa6g3668 279 Gene3D - 34 87 - -
Psa6g3668 279 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Psa6g3668 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Psa6g3668 279 CDD SANT 37 82 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3668 Psa-Chr6 319034614 319035834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3668 27 278 MYB Transcription Factor Family AT2G47190 50.193 6.34e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa6g3668 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3668 K09422 - gmx:100777932 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3668 6 319034614 319035834 Psa6g3668 6 319034614 319035834 ECH